Browse Element(s) Details


Os.34701.1.S1_s_at

Description gb:AK070468.1
DB_XREF= gi:32980492
TID=Os.34701.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34701 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023052D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023052D05, full insert sequence.
FL= gb:AK070468.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0713011/11ReMembR-H2 protein JR702, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07080Os.27493.1.S1_at11/113+3595722..3601316Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os03g07090OsAffx.30774.1.S1_s_at11/113+3603944..3605013hypothetical protein
LOC_Os03g07100Os.4612.1.S1_at10/113+3605503..3607694Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g07100OsAffx.3160.1.S1_at5/113+3605503..3607694Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g07110Os.27089.1.S1_at11/113+3610246..3614636calmodulin-binding family protein, putative, expressed
LOC_Os03g07120OsAffx.25002.1.S1_at11/113+3616741..3621573lipase, putative, expressed
LOC_Os03g07120OsAffx.22506.1.A1_at1/113+3616741..3621573lipase, putative, expressed
LOC_Os03g07120OsAffx.13781.1.S1_at1/113+3616741..3621573lipase, putative, expressed
LOC_Os03g07130Os.34701.1.S1_s_at11/113+3626088..3630691ReMembR-H2 protein JR702, putative, expressed
LOC_Os03g07140Os.49681.1.S1_at11/113+3632820..3636250Male sterility protein 2, putative, expressed
LOC_Os03g07150Os.12512.1.S1_at11/113+3636238..3640971Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os03g07150Os.27801.2.A1_x_at2/113+3636238..3640971Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os03g07160Os.27429.1.S1_at11/113+3643751..3649046Kelch motif family protein, expressed
LOC_Os03g07170Os.53485.1.S1_at11/113+3653396..3657425lactose permease, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008233molecular_functionpeptidase activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34701.1.S1_s_at--196--9691Chr03:3629998..3630022 (25 bp)
TCACTTGTCTCCACCAATCAATATA
LOC_Os03g07130
Os.34701.1.S1_s_at--848--2691Chr03:3630118..3630142 (25 bp)
AAGCTACTATCTCGGTTCATCCAGC
LOC_Os03g07130
Os.34701.1.S1_s_at--694--1531Chr03:3630144..3630168 (25 bp)
AGCATCGGTCATACCTAAGGCGCTG
LOC_Os03g07130
Os.34701.1.S1_s_at--517--3051Chr03:3630174..3630198 (25 bp)
AATCAGGGCCTAGCTTGTCTACCAT
LOC_Os03g07130
Os.34701.1.S1_s_at--696--2491Chr03:3630216..3630240 (25 bp)
AACAGTCCCAGTTACGTCATGGCGG
LOC_Os03g07130
Os.34701.1.S1_s_at--739--3031Chr03:3630291..3630315 (25 bp)
AATCCTACCTGAGACACTGTGCTGA
LOC_Os03g07130
Os.34701.1.S1_s_at--984--10291Chr03:3630355..3630379 (25 bp)
TTTCCGGCAATCCTATCTGAGACAC
LOC_Os03g07130
Os.34701.1.S1_s_at--121--1391Chr03:3630478..3630502 (25 bp)
AGACCTGGCGTGACTTGTGTATACA
LOC_Os03g07130
Os.34701.1.S1_s_at--449--7191Chr03:3630543..3630567 (25 bp)
GTCGTATTTGTTTGTGTTTCTCCTG
LOC_Os03g07130
Os.34701.1.S1_s_at--831--10451Chr03:3630597..3630621 (25 bp)
TTAGCGCTCTATTTGTTTCACCCTA
LOC_Os03g07130
Os.34701.1.S1_s_at--603--2011Chr03:3630659..3630683 (25 bp)
ACTAAGCAATATCATCCGCGCGTTG
LOC_Os03g07130
Target Sequence 
TCACTTGTCTCCACCAATCAATATAAGCTACTATCTCGGTTCATCCAGCCAGCATCGGTCATACCTAAGGCGCTGTGGGG
AATCAGGGCCTAGCTTGTCTACCATGGCCCCTCAGTCGCCGCAACAGTCCCAGTTACGTCATGGCGGCGAATCCGACTTA
AATCTAGCAGGAGCATCCTCAGGCCAGTCTTTCCGGCAATCCTACCTGAGACACTGTGCTGATTCAGAGGTAAATCTAGC
AGGAGCATCCTCAGGCCAGTCTTTCCGGCAATCCTATCTGAGACACTGTGCTGATTCAGATGCAAGCTTATCTGCCATGG
CATCAGCTCAATCCTTGCCAGGATGCTGATTTCTCTGGGATCAGATCAGCTTCTGTCTGTACTAAGACCTGGCGTGACTT
GTGTATACATTTGAGGCATGTACTATAGGCTATTGGTTGAGAGAAAATGGTCGTATTTGTTTGTGTTTCTCCTGCTGCCC
TGCCCTTTTGGTTGTAGTGATTGTTAGCGCTCTATTTGTTTCACCCTAGAGTGTATAGTACAATTGTACAGCAACTTTCT
TTTAAACTAAGCAATATCATCCGCGCGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34701.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis