Browse Element(s) Details


OsAffx.13781.1.S1_at

Description tigr:9632.m01060
TID=OsAffx.13781.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1186011/11hypothetical protein
LOC_Os03g071201/11lipase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g11820Os.50428.1.S1_at11/114+6455359..6461783ABC-2 type transporter family protein, expressed
LOC_Os04g11830Os.53807.1.S2_at11/114+6470913..6475626PCF2 DNA binding protein, putative, expressed
LOC_Os04g11830Os.53807.1.S1_at11/114+6470913..6475626PCF2 DNA binding protein, putative, expressed
LOC_Os04g11840NANA4+6479161..6479631hypothetical protein
LOC_Os04g11850Os.51062.1.S1_at5/114+6481594..6483296hypothetical protein
LOC_Os04g11850Os.51062.1.S1_x_at4/114+6481594..6483296hypothetical protein
LOC_Os04g11850OsAffx.27771.2.S1_s_at4/114+6481594..6483296hypothetical protein
LOC_Os04g11850OsAffx.27771.1.S1_x_at3/114+6481594..6483296hypothetical protein
LOC_Os04g11850Os.53560.1.S1_at2/114+6481594..6483296hypothetical protein
LOC_Os04g11850Os.36875.1.A1_at1/114+6481594..6483296hypothetical protein
LOC_Os04g11860OsAffx.13781.1.S1_at11/114+6484277..6485222hypothetical protein
LOC_Os04g11870NANA4+6490557..6491107hypothetical protein
LOC_Os04g11880Os.8814.1.S1_at11/114+6491586..6498899Vacuolar assembly protein VPS41 homolog, putative, expressed
LOC_Os04g11890Os.54963.1.S1_at11/114+6500544..6502281F-box domain containing protein, expressed
LOC_Os04g11900OsAffx.13933.1.S1_x_at1/114+6504942..6506369hypothetical protein
LOC_Os04g11910OsAffx.28472.1.S1_x_at11/114+6508556..6515588Transposable element protein, putative, MuDR
LOC_Os04g11910OsAffx.17848.5.S1_x_at4/114+6508556..6515588Transposable element protein, putative, MuDR
LOC_Os04g11910OsAffx.17848.1.S1_x_at2/114+6508556..6515588Transposable element protein, putative, MuDR
LOC_Os04g11910OsAffx.17848.3.S1_x_at2/114+6508556..6515588Transposable element protein, putative, MuDR
LOC_Os04g11910OsAffx.19815.1.S1_at1/114+6508556..6515588Transposable element protein, putative, MuDR
LOC_Os04g11910OsAffx.17848.2.S1_x_at1/114+6508556..6515588Transposable element protein, putative, MuDR

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13781.1.S1_at--927--9452Chr04:6484854..6484878 (25 bp)
TCGGCGCAGTACATCGTGATGTGGC
LOC_Os04g11860
OsAffx.13781.1.S1_at--1104--7491Chr04:6484895..6484919 (25 bp)
GTGGATCGTCGATTATTTTGCCGAT
LOC_Os04g11860
OsAffx.13781.1.S1_at--922--10391Chr04:6484910..6484934 (25 bp)
TTTTGCCGATTATTCCATTGTGCCG
LOC_Os04g11860
OsAffx.13781.1.S1_at--96--4511Chr04:6484914..6484938 (25 bp)
GCCGATTATTCCATTGTGCCGATTA
LOC_Os04g11860
OsAffx.13781.1.S1_at--93--4331Chr04:6484924..6484948 (25 bp)
CCATTGTGCCGATTATTTTGTTATT
LOC_Os04g11860
OsAffx.13781.1.S1_at--1088--3771Chr04:6484955..6484979 (25 bp)
CTCGTCGTCGGGATGCCGATTATCT
LOC_Os04g11860
OsAffx.13781.1.S1_at--866--7191Chr04:6484961..6484985 (25 bp)
GTCGGGATGCCGATTATCTCCATTC
LOC_Os04g11860
OsAffx.13781.1.S1_at--976--9172Chr04:6484968..6484992 (25 bp)
TGCCGATTATCTCCATTCCTGATGG
LOC_Os04g11860
OsAffx.13781.1.S1_at--1117--9251Chr04:6485035..6485059 (25 bp)
TCCGGCCGGGAAGTTGCCTACGAAG
LOC_Os04g11860
OsAffx.13781.1.S1_at--51--2932Chr04:6485057..6485081 (25 bp)
AAGGAGACGGCGACTAGCAGCAGCA
LOC_Os04g11860
OsAffx.13781.1.S1_at--263--9351Chr04:6485142..6485166 (25 bp)
TCGCTGCCACAGTTCGCCGTGGTGG
LOC_Os04g11860
Target Sequence 
TCGGCGCAGTACATCGTGATGTGGCAGCTGGCGCCCAGCATGTGGATCGTCGATTATTTTGCCGATTATTCCATTGTGCC
GATTATTTTGTTATTTTGGTGCTCGTCGTCGGGATGCCGATTATCTCCATTCCTGATGGCGCCGTCGTTCTTGGCGAGGC
CCAGCGGGAGGCTCGTCGTGCTCCGGCCGGGAAGTTGCCTACGAAGGAGACGGCGACTAGCAGCAGCACCAGCCATTGGC
CTCGTCGCCGGCGACAACCTCACCGTCCCGCTCCGCTGCGCCTGCCCCTCGCTGCCACAGTTCGCCGTGGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13781.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis