Browse Element(s) Details


Os.51062.1.S1_at

Description gb:AK060473.1
DB_XREF= gi:32970491
TID=Os.51062.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51062 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-012-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-012-E10, full insert sequence.
FL= gb:AK060473.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g118505/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g11820Os.50428.1.S1_at11/114+6455359..6461783ABC-2 type transporter family protein, expressed
LOC_Os04g11830Os.53807.1.S2_at11/114+6470913..6475626PCF2 DNA binding protein, putative, expressed
LOC_Os04g11830Os.53807.1.S1_at11/114+6470913..6475626PCF2 DNA binding protein, putative, expressed
LOC_Os04g11840NANA4+6479161..6479631hypothetical protein
LOC_Os04g11850Os.51062.1.S1_at5/114+6481594..6483296hypothetical protein
LOC_Os04g11850Os.51062.1.S1_x_at4/114+6481594..6483296hypothetical protein
LOC_Os04g11850OsAffx.27771.2.S1_s_at4/114+6481594..6483296hypothetical protein
LOC_Os04g11850OsAffx.27771.1.S1_x_at3/114+6481594..6483296hypothetical protein
LOC_Os04g11850Os.53560.1.S1_at2/114+6481594..6483296hypothetical protein
LOC_Os04g11850Os.36875.1.A1_at1/114+6481594..6483296hypothetical protein
LOC_Os04g11860OsAffx.13781.1.S1_at11/114+6484277..6485222hypothetical protein
LOC_Os04g11870NANA4+6490557..6491107hypothetical protein
LOC_Os04g11880Os.8814.1.S1_at11/114+6491586..6498899Vacuolar assembly protein VPS41 homolog, putative, expressed
LOC_Os04g11890Os.54963.1.S1_at11/114+6500544..6502281F-box domain containing protein, expressed
LOC_Os04g11900OsAffx.13933.1.S1_x_at1/114+6504942..6506369hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51062.1.S1_at--247--4932Chr04:6480330..6480547 (25 bp)
GCTTGCAGTGACAAGGAATACCACT
NONE
Os.51062.1.S1_at--16--5032Chr04:6480334..6480551 (25 bp)
GCAGTGACAAGGAATACCACTAATT
NONE
Os.51062.1.S1_at--816--3731NONE
CTACAATTGCCATAGGAAGATGCCT
NONE
Os.51062.1.S1_at--385--10691NONE
TTGCCATAGGAAGATGCCTGATGCT
NONE
Os.51062.1.S1_at--512--4313Chr04:6481587..6481608 (22 bp)
CCATAGGAAGATGCCTGATGCTAAT
NONE
Os.51062.1.S1_at--180--9093Chr12:19718782..19718803 (22 bp)
TGCTAATGTCTTCTCAAGCTTTTGG
NONE
Os.51062.1.S1_at--279--9772Chr04:6481605..6481629 (25 bp)
TAATGTCTTCTCAAGCTTTTGGATT
LOC_Os04g11850
Os.51062.1.S1_at--233--772Chr04:6481607..6481629 (23 bp)
ATGTCTTCTCAAGCTTTTGGATTTC
LOC_Os04g11850
Os.51062.1.S1_at--1024--7132Chr04:6481609..6481629 (21 bp)
GTCTTCTCAAGCTTTTGGATTTCTA
LOC_Os04g11850
Os.51062.1.S1_at--42--3752Chr04:6481614..6481840 (25 bp)
CTCAAGCTTTTGGATTTCTAATAGT
LOC_Os04g11850
Os.51062.1.S1_at--15--4711Chr02:13361580..13361806 (25 bp)
GCTTTTGGATTTCTAATAGTGGAAC
NONE
Target Sequence 
GCTTGCAGTGACAAGGAATACCACTAATTTAAGTGCTCTCGAGTTAAAGAAGATAGCAAGCTTGGATGAGGTATGCTTTG
CTCAATTGTAAGCAGTAGCAAGCTAAGGTTCAACAGAACCATGAGTACAAGCAGCGGAAGGATGCATCAATCTACAATTG
CCATAGGAAGATGCCTGATGCTAATGTCTTCTCAAGCTTTTGGATTTCTAATAGTGGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51062.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis