Browse Element(s) Details


Os.53807.1.S1_at

Description gb:D87260.1
DB_XREF= gi:2580437
TID=Os.53807.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53807 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for PCF1, complete cds.
PROD=PCF1
FL= gb:D87260.1 gb:AK100180.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1183011/11PCF2 DNA binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g11800OsAffx.25986.1.S1_at11/114+6445205..6446591hypothetical protein
LOC_Os04g11810OsAffx.25987.1.S1_at11/114+6451810..6453135Transferase family protein, expressed
LOC_Os04g11820Os.50428.1.S1_at11/114+6455359..6461783ABC-2 type transporter family protein, expressed
LOC_Os04g11830Os.53807.1.S2_at11/114+6470913..6475626PCF2 DNA binding protein, putative, expressed
LOC_Os04g11830Os.53807.1.S1_at11/114+6470913..6475626PCF2 DNA binding protein, putative, expressed
LOC_Os04g11840NANA4+6479161..6479631hypothetical protein
LOC_Os04g11850Os.51062.1.S1_at5/114+6481594..6483296hypothetical protein
LOC_Os04g11850Os.51062.1.S1_x_at4/114+6481594..6483296hypothetical protein
LOC_Os04g11850OsAffx.27771.2.S1_s_at4/114+6481594..6483296hypothetical protein
LOC_Os04g11850OsAffx.27771.1.S1_x_at3/114+6481594..6483296hypothetical protein
LOC_Os04g11850Os.53560.1.S1_at2/114+6481594..6483296hypothetical protein
LOC_Os04g11850Os.36875.1.A1_at1/114+6481594..6483296hypothetical protein
LOC_Os04g11860OsAffx.13781.1.S1_at11/114+6484277..6485222hypothetical protein
LOC_Os04g11870NANA4+6490557..6491107hypothetical protein
LOC_Os04g11880Os.8814.1.S1_at11/114+6491586..6498899Vacuolar assembly protein VPS41 homolog, putative, expressed
LOC_Os04g11890Os.54963.1.S1_at11/114+6500544..6502281F-box domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009653biological_processmorphogenesis
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53807.1.S1_at--355--4631Chr04:6475173..6475197 (25 bp)
GCGTTCGTCCATGTGCCTTACTACA
LOC_Os04g11830
Os.53807.1.S1_at--851--9611Chr04:6475139..6475163 (25 bp)
TCATGCAGCCGCCTAACGCGGACGA
LOC_Os04g11830
Os.53807.1.S1_at--314--4531Chr04:6475074..6475098 (25 bp)
GCCGCCGACGAGAACAATAATTAAT
LOC_Os04g11830
Os.53807.1.S1_at--547--351Chr04:6475058..6475082 (25 bp)
ATAATTAATTTAGAACTGCCGCTGT
LOC_Os04g11830
Os.53807.1.S1_at--564--5451Chr04:6475046..6475070 (25 bp)
GAACTGCCGCTGTTAGGTTTAGGAG
LOC_Os04g11830
Os.53807.1.S1_at--94--3131Chr04:6474959..6474983 (25 bp)
AATTTAACCTCATTGTCCTTGTGGC
LOC_Os04g11830
Os.53807.1.S1_at--16--9591Chr04:6474950..6474974 (25 bp)
TCATTGTCCTTGTGGCGGTTGCGGC
LOC_Os04g11830
Os.53807.1.S1_at--420--3931Chr04:6474926..6474950 (25 bp)
CGGCGGCATGGATTTAGGTTATTTA
LOC_Os04g11830
Os.53807.1.S1_at--645--1011Chr04:6474911..6474935 (25 bp)
AGGTTATTTAGATGCCTTATTCAGG
LOC_Os04g11830
Os.53807.1.S1_at--410--7711Chr04:6474873..6474897 (25 bp)
GGGTGATTCAGATGGTTTCTTAGAG
LOC_Os04g11830
Os.53807.1.S1_at--187--2971Chr04:6474835..6474859 (25 bp)
AATGGAGAGCTCTCTGTAAGTGGTG
LOC_Os04g11830
Target Sequence 
GCGTTCGTCCATGTGCCTTACTACACCGCGCTCCTCATGCAGCCGCCTAACGCGGACGAGCCCCCCATGGCATCCGCTGC
CTCCGCCTCGGGCACCACCGCCGCCGACGAGAACAATAATTAATTTAGAACTGCCGCTGTTAGGTTTAGGAGCTTGGAGC
GTGTTAGGGTTAGGGTTCCCCGGCNTATTTAGGAGAGGTCTCCCCCTCCTCAATAATTTAACCTCATTGTCCTTGTGGCG
GTTGCGGCGGCGGCATGGATTTAGGTTATTTAGATGCCTTATTCAGGCAAGCAAATGAGGGGGTGATTCAGATGGTTTCT
TAGAGAGGAGGGCAGAAAAATGGAGAGCTCTCTGTAAGTGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53807.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis