Browse Element(s) Details


OsAffx.25986.1.S1_at

Description tigr:9632.m01054
TID=OsAffx.25986.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1180011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g11750NANA4+6417649..6420429hypothetical protein
LOC_Os04g11760OsAffx.13780.1.S1_at11/114+6421995..6422315Resistance protein, putative
LOC_Os04g11770OsAffx.19542.3.S1_x_at8/114+6423431..6427653retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g11780OsAffx.3768.1.S1_at11/114+6428565..6432301resistance protein LR10, putative
LOC_Os04g11790Os.54230.1.S1_at11/114+6434709..6436053F-box domain containing protein, expressed
LOC_Os04g11800OsAffx.25986.1.S1_at11/114+6445205..6446591hypothetical protein
LOC_Os04g11810OsAffx.25987.1.S1_at11/114+6451810..6453135Transferase family protein, expressed
LOC_Os04g11820Os.50428.1.S1_at11/114+6455359..6461783ABC-2 type transporter family protein, expressed
LOC_Os04g11830Os.53807.1.S2_at11/114+6470913..6475626PCF2 DNA binding protein, putative, expressed
LOC_Os04g11830Os.53807.1.S1_at11/114+6470913..6475626PCF2 DNA binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25986.1.S1_at--178--6051Chr04:6445274..6445298 (25 bp)
GAGATCATTGAGCTCACTCGCGACA
LOC_Os04g11800
OsAffx.25986.1.S1_at--1032--9371Chr04:6445299..6445323 (25 bp)
TCGAGGCATCGACCCAGCTATTCAT
LOC_Os04g11800
OsAffx.25986.1.S1_at--950--1551Chr04:6445314..6445338 (25 bp)
AGCTATTCATCTGGGCCATCAAGGA
LOC_Os04g11800
OsAffx.25986.1.S1_at--356--7951Chr04:6445393..6445417 (25 bp)
GGATATGAGGAGCACATCACGGATA
LOC_Os04g11800
OsAffx.25986.1.S1_at--610--9051Chr04:6446320..6446344 (25 bp)
TGCAGGTTGCTAGCACCAGCGTGGA
LOC_Os04g11800
OsAffx.25986.1.S1_at--601--4351Chr04:6446335..6446359 (25 bp)
CCAGCGTGGAGAAGTCTGTGGCCAA
LOC_Os04g11800
OsAffx.25986.1.S1_at--482--6231Chr04:6446367..6446391 (25 bp)
GATGGCGACACGGACAACACGGCTA
LOC_Os04g11800
OsAffx.25986.1.S1_at--1047--2371Chr04:6446382..6446406 (25 bp)
AACACGGCTAGGAGGGCACCTGGTA
LOC_Os04g11800
OsAffx.25986.1.S1_at--199--5091Chr04:6446397..6446421 (25 bp)
GCACCTGGTAGAGAGCTCGCTGTGA
LOC_Os04g11800
OsAffx.25986.1.S1_at--439--1171Chr04:6446435..6446459 (25 bp)
AGTAGGTCGGGCGTCACCAAGCCGC
LOC_Os04g11800
OsAffx.25986.1.S1_at--837--6231Chr04:6446537..6446561 (25 bp)
GATGGCAGCACAGACGATGCAGCTA
LOC_Os04g11800
Target Sequence 
GAGATCATTGAGCTCACTCGCGACATCGAGGCATCGACCCAGCTATTCATCTGGGCCATCAAGGAGGCCAAGCCACCACC
GCCGCCGCCGGTGTCAAGGGAGAGTGGCTCGATGGCAAGGGATATGAGGAGCACATCACGGATAGGGGTCTCCTGGTCGG
GTGTCACCACGCCACTCATGTTCCTCCCCAATGAGGCCGAGGAAGTGCAGGTTGCTAGCACCAGCGTGGAGAAGTCTGTG
GCCAAGCTGATGGATGGCGACACGGACAACACGGCTAGGAGGGCACCTGGTAGAGAGCTCGCTGTGAGGGCCAGGGCGGC
AGTAGGTCGGGCGTCACCAAGCCGCTCATGTACCTCCCCGTCGAGGCCGAGGGCATGCAGGTCGCCAGCTCCGACGTGGA
GATGGCATGGCCAAGCTGAATGGATGGCAGCACAGACGATGCAGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25986.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis