Browse Element(s) Details


Os.54230.1.S1_at

Description gb:AK102654.1
DB_XREF= gi:32987863
TID=Os.54230.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54230 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033101G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033101G08, full insert sequence.
FL= gb:AK102654.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1179011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g11750NANA4+6417649..6420429hypothetical protein
LOC_Os04g11760OsAffx.13780.1.S1_at11/114+6421995..6422315Resistance protein, putative
LOC_Os04g11770OsAffx.19542.3.S1_x_at8/114+6423431..6427653retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g11780OsAffx.3768.1.S1_at11/114+6428565..6432301resistance protein LR10, putative
LOC_Os04g11790Os.54230.1.S1_at11/114+6434709..6436053F-box domain containing protein, expressed
LOC_Os04g11800OsAffx.25986.1.S1_at11/114+6445205..6446591hypothetical protein
LOC_Os04g11810OsAffx.25987.1.S1_at11/114+6451810..6453135Transferase family protein, expressed
LOC_Os04g11820Os.50428.1.S1_at11/114+6455359..6461783ABC-2 type transporter family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54230.1.S1_at--337--5651Chr04:6435176..6435200 (25 bp)
GACAGAATTCTGGTCTCTCAAGCAC
LOC_Os04g11790
Os.54230.1.S1_at--843--6591Chr04:6435149..6435173 (25 bp)
GATTGAATTGCCAGTCCCAGATATA
LOC_Os04g11790
Os.54230.1.S1_at--442--7331Chr04:6435064..6435088 (25 bp)
GTGCTTGTGCTGGTTTACTACAGAC
LOC_Os04g11790
Os.54230.1.S1_at--275--871Chr04:6435038..6435062 (25 bp)
ATGGCTGCTTTACATTGGTACTGAT
LOC_Os04g11790
Os.54230.1.S1_at--860--8811Chr04:6434984..6435008 (25 bp)
TGTTGGGTGCCACTACAATACTCCT
LOC_Os04g11790
Os.54230.1.S1_at--786--3091Chr04:6434968..6434992 (25 bp)
AATACTCCTCTGAAGCTTAAGCAAA
LOC_Os04g11790
Os.54230.1.S1_at--659--5271Chr04:6434897..6434921 (25 bp)
GAATGCTCGACCTTTCATCTGATGC
LOC_Os04g11790
Os.54230.1.S1_at--80--5891Chr04:6434870..6434894 (25 bp)
GAGCGGCTTTGCTAGTTGTTGGACT
LOC_Os04g11790
Os.54230.1.S1_at--1154--10311Chr04:6434827..6434851 (25 bp)
TTTCATCCTGGTGGGTAGCAACTTT
LOC_Os04g11790
Os.54230.1.S1_at--67--2531Chr04:6434808..6434832 (25 bp)
AACTTTTGGTGCTGTCTTTTAGAGG
LOC_Os04g11790
Os.54230.1.S1_at--398--7491Chr04:6434764..6434788 (25 bp)
GTGGGATGTCACCTTGCTAAAATGT
LOC_Os04g11790
Target Sequence 
GACAGAATTCTGGTCTCTCAAGCACCGGATTGAATTGCCAGTCCCAGATATAAAGGGGAAGCTTGATGATGGTGATGATT
GGAGTGCGATGGTATTGTCTGAGGACGGGGATGTGCTTGTGCTGGTTTACTACAGACAATGGCTGCTTTACATTGGTACT
GATGGCAAGCTGTTGGCGAGTTTTCAACATGATGTTGGGTGCCACTACAATACTCCTCTGAAGCTTAAGCAAAGCCTTGT
TCCACATGCATTCTTTCCATTGTTAAAGGGTTATGTCGTGAATGCTCGACCTTTCATCTGATGCTGGAGCGGCTTTGCTA
GTTGTTGGACTCGTCTTGAGATGGTTTCTTTTCATCCTGGTGGGTAGCAACTTTTGGTGCTGTCTTTTAGAGGTTGTGGA
CACTGTTATCTTGTGGGATGTCACCTTGCTAAAATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54230.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis