Browse Element(s) Details


OsAffx.13780.1.S1_at

Description tigr:9632.m01050
TID=OsAffx.13780.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AJ302295 MLA6-2 protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1176011/11Resistance protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g11700NANA4+6396196..6397999retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g11710NANA4+6398425..6399290retrotransposon protein, putative, unclassified
LOC_Os04g11720OsAffx.8916.1.S1_x_at2/114+6400547..6403454retrotransposon protein, putative, unclassified
LOC_Os04g11720OsAffx.13772.1.S1_at1/114+6400547..6403454retrotransposon protein, putative, unclassified
LOC_Os04g11730OsAffx.25982.3.S1_at10/114+6404815..6409299hypothetical protein
LOC_Os04g11750NANA4+6417649..6420429hypothetical protein
LOC_Os04g11760OsAffx.13780.1.S1_at11/114+6421995..6422315Resistance protein, putative
LOC_Os04g11770OsAffx.19542.3.S1_x_at8/114+6423431..6427653retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g11780OsAffx.3768.1.S1_at11/114+6428565..6432301resistance protein LR10, putative
LOC_Os04g11790Os.54230.1.S1_at11/114+6434709..6436053F-box domain containing protein, expressed
LOC_Os04g11800OsAffx.25986.1.S1_at11/114+6445205..6446591hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13780.1.S1_at--519--8071Chr04:6422025..6422049 (25 bp)
GGAGCAATGAATTCTCTTCTCAAGA
LOC_Os04g11760
OsAffx.13780.1.S1_at--29--3771Chr04:6422038..6422062 (25 bp)
CTCTTCTCAAGAAATTGGCCGCTAT
LOC_Os04g11760
OsAffx.13780.1.S1_at--172--5611Chr04:6422048..6422072 (25 bp)
GAAATTGGCCGCTATGCTACGCTAT
LOC_Os04g11760
OsAffx.13780.1.S1_at--676--4851Chr04:6422063..6422087 (25 bp)
GCTACGCTATGAATACAAGCTGCAC
LOC_Os04g11760
OsAffx.13780.1.S1_at--519--5571Chr04:6422117..6422141 (25 bp)
GAAAGATGAGCTTGAGGCCATGCGA
LOC_Os04g11760
OsAffx.13780.1.S1_at--555--4431Chr04:6422133..6422157 (25 bp)
GCCATGCGAGCGTTCCTGTTGAAAA
LOC_Os04g11760
OsAffx.13780.1.S1_at--339--10771Chr04:6422167..6422191 (25 bp)
TTGAGGATCCAGACGTGCAAGCCAA
LOC_Os04g11760
OsAffx.13780.1.S1_at--35--9031Chr04:6422182..6422206 (25 bp)
TGCAAGCCAAGCTCCGGATCAGGGC
LOC_Os04g11760
OsAffx.13780.1.S1_at--188--3471Chr04:6422201..6422225 (25 bp)
CAGGGCTGTGCGAGAGCTATCGTAT
LOC_Os04g11760
OsAffx.13780.1.S1_at--1031--2211Chr04:6422245..6422269 (25 bp)
ACAAGTCCATGGTCCTAATCGATCA
LOC_Os04g11760
OsAffx.13780.1.S1_at--627--3051Chr04:6422261..6422285 (25 bp)
AATCGATCATGAACCTTCTTCCAGG
LOC_Os04g11760
Target Sequence 
GGAGCAATGAATTCTCTTCTCAAGAAATTGGCCGCTATGCTACGCTATGAATACAAGCTGCACAAGGATGTGTATGAAGA
CATAGAGTTTATGAAAGATGAGCTTGAGGCCATGCGAGCGTTCCTGTTGAAAATGTCAGAGGTTGAGGATCCAGACGTGC
AAGCCAAGCTCCGGATCAGGGCTGTGCGAGAGCTATCGTATGATATCGAGGACTACATCGACAAGTCCATGGTCCTAATC
GATCATGAACCTTCTTCCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13780.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis