Browse Element(s) Details


OsAffx.3768.1.S1_at

Description tigr:9632.m01052
TID=OsAffx.3768.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=resistance protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1178011/11resistance protein LR10, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g11730OsAffx.25982.3.S1_at10/114+6404815..6409299hypothetical protein
LOC_Os04g11750NANA4+6417649..6420429hypothetical protein
LOC_Os04g11760OsAffx.13780.1.S1_at11/114+6421995..6422315Resistance protein, putative
LOC_Os04g11770OsAffx.19542.3.S1_x_at8/114+6423431..6427653retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g11780OsAffx.3768.1.S1_at11/114+6428565..6432301resistance protein LR10, putative
LOC_Os04g11790Os.54230.1.S1_at11/114+6434709..6436053F-box domain containing protein, expressed
LOC_Os04g11800OsAffx.25986.1.S1_at11/114+6445205..6446591hypothetical protein
LOC_Os04g11810OsAffx.25987.1.S1_at11/114+6451810..6453135Transferase family protein, expressed
LOC_Os04g11820Os.50428.1.S1_at11/114+6455359..6461783ABC-2 type transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3768.1.S1_at--588--2411Chr04:6431740..6431764 (25 bp)
AAACAACGATGATTTCTCTTCCTTG
LOC_Os04g11780
OsAffx.3768.1.S1_at--918--3751Chr04:6431755..6431779 (25 bp)
CTCTTCCTTGTTACTACCTCTAAAT
LOC_Os04g11780
OsAffx.3768.1.S1_at--85--9291Chr04:6431853..6431877 (25 bp)
TCCGGCGATTGGCTCTTACTATTAA
LOC_Os04g11780
OsAffx.3768.1.S1_at--528--9631Chr04:6431899..6431923 (25 bp)
TCAGGTCCTTGGAAGTATACCCAGT
LOC_Os04g11780
OsAffx.3768.1.S1_at--133--6951Chr04:6431935..6431959 (25 bp)
GTACCTATGTTTAGACCCAGACCAA
LOC_Os04g11780
OsAffx.3768.1.S1_at--517--5571Chr04:6431963..6431987 (25 bp)
GAAAGATCTATTGCCATCAGCGACA
LOC_Os04g11780
OsAffx.3768.1.S1_at--742--9131Chr04:6431997..6432021 (25 bp)
TCCAACAGTTGGAGCCTTTCACTTT
LOC_Os04g11780
OsAffx.3768.1.S1_at--1099--9191Chr04:6432021..6432045 (25 bp)
TCCAATCTACGCATACGGGTCTGAT
LOC_Os04g11780
OsAffx.3768.1.S1_at--385--4371Chr04:6432064..6432088 (25 bp)
GCCAAGGCTTGGACAACTTTCGTTT
LOC_Os04g11780
OsAffx.3768.1.S1_at--417--7511Chr04:6432123..6432147 (25 bp)
GTGGTTTTTGTCTAGGCATCCAGCA
LOC_Os04g11780
OsAffx.3768.1.S1_at--1099--3811Chr04:6432154..6432178 (25 bp)
CTGCCTCACTATGGTCAGTGTCAGT
LOC_Os04g11780
Target Sequence 
AAACAACGATGATTTCTCTTCCTTGTTACTACCTCTAAATAGCATTAAAAGTTTTGTACTCAGAGGAGAAAGCATTTCCA
TGGTTAACATATGGCAGAGCTCCCTTGTGAGCATCCGGCGATTGGCTCTTACTATTAAGGACATAGATCAAGATGATCTT
CAGGTCCTTGGAAGTATACCCAGTTTGACAAATTTGTACCTATGTTTAGACCCAGACCAAAATGAAAGATCTATTGCCAT
CAGCGACATCCATGGATTCCAACAGTTGGAGCCTTTCACTTTCCAATCTACGCATACGGGTCTGATGTTTGAAGCTGGAT
CTATGCCAAGGCTTGGACAACTTTCGTTTGGAATCAATGTAGCTAATTTCAAGTCAACATATGGTGGTTTTTGTCTAGGC
ATCCAGCACCTGTCCTGCCTCACTATGGTCAGTGTCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3768.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis