Browse Element(s) Details


Os.50428.1.S1_at

Description gb:AK121164.1
DB_XREF= gi:37990787
TID=Os.50428.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50428 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023080I03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023080I03, full insert sequence.
FL= gb:AK121164.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1182011/11ABC-2 type transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g11780OsAffx.3768.1.S1_at11/114+6428565..6432301resistance protein LR10, putative
LOC_Os04g11790Os.54230.1.S1_at11/114+6434709..6436053F-box domain containing protein, expressed
LOC_Os04g11800OsAffx.25986.1.S1_at11/114+6445205..6446591hypothetical protein
LOC_Os04g11810OsAffx.25987.1.S1_at11/114+6451810..6453135Transferase family protein, expressed
LOC_Os04g11820Os.50428.1.S1_at11/114+6455359..6461783ABC-2 type transporter family protein, expressed
LOC_Os04g11830Os.53807.1.S2_at11/114+6470913..6475626PCF2 DNA binding protein, putative, expressed
LOC_Os04g11830Os.53807.1.S1_at11/114+6470913..6475626PCF2 DNA binding protein, putative, expressed
LOC_Os04g11840NANA4+6479161..6479631hypothetical protein
LOC_Os04g11850Os.51062.1.S1_at5/114+6481594..6483296hypothetical protein
LOC_Os04g11850Os.51062.1.S1_x_at4/114+6481594..6483296hypothetical protein
LOC_Os04g11850OsAffx.27771.2.S1_s_at4/114+6481594..6483296hypothetical protein
LOC_Os04g11850OsAffx.27771.1.S1_x_at3/114+6481594..6483296hypothetical protein
LOC_Os04g11850Os.53560.1.S1_at2/114+6481594..6483296hypothetical protein
LOC_Os04g11850Os.36875.1.A1_at1/114+6481594..6483296hypothetical protein
LOC_Os04g11860OsAffx.13781.1.S1_at11/114+6484277..6485222hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005215molecular_functiontransporter activity
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50428.1.S1_at--275--5911Chr04:6456140..6456164 (25 bp)
GAGCTCATTGGCATACTTTCTTGCT
LOC_Os04g11820
Os.50428.1.S1_at--303--6471Chr04:6456022..6456046 (25 bp)
GATAACTATATCATTCTCCTCGCAC
LOC_Os04g11820
Os.50428.1.S1_at--207--3311Chr04:6456000..6456024 (25 bp)
CACTTGTGTACTGCGTAACCGGTAT
LOC_Os04g11820
Os.50428.1.S1_at--1156--9851Chr04:6455971..6455995 (25 bp)
TACACTTTTGCTATCTGCTTCAACC
LOC_Os04g11820
Os.50428.1.S1_at--683--2611Chr04:6455954..6455974 (21 bp)
AACCCTGGTTCTGCACAACTGTGTT
LOC_Os04g11820
Os.50428.1.S1_at--1072--8671Chr04:6455848..6455871 (24 bp)
TGTGTTCTGCATTGATCCCAGTTGT
LOC_Os04g11820
Os.50428.1.S1_at--260--6651Chr04:6455828..6455852 (25 bp)
GTTGTTCTGACTTTGTTATCCACTC
LOC_Os04g11820
Os.50428.1.S1_at--1112--3071Chr04:6455801..6455825 (25 bp)
AATAATACCCCTGCAATTCTCAATA
LOC_Os04g11820
Os.50428.1.S1_at--509--351Chr04:6455574..6455598 (25 bp)
ATAACTCGCTGTGGGTTGTTGTTCA
LOC_Os04g11820
Os.50428.1.S1_at--250--5211Chr04:6455480..6455504 (25 bp)
GAATTGTTGCATTTGTGGCCTTGAT
LOC_Os04g11820
Os.50428.1.S1_at--210--6131Chr04:6455433..6455457 (25 bp)
GAGGGCAATTGCACCAACTTTTCAC
LOC_Os04g11820
Target Sequence 
GAGCTCATTGGCATACTTTCTTGCTAGGGATACAATTGATCATTTCAGCACGATTGTGAAGCCGATCGTTTACCTCTCCA
TGTTCTACTACTTCAATAATCCAAGATCTACAATTACCGATAACTATATCATTCTCCTCGCACTTGTGTACTGCGTAACC
GGTATAGGATACACTTTTGCTATCTGCTTCAACCCTGGTTCTGCACAACTGTGTTCTGCATTGATCCCAGTTGTTCTGAC
TTTGTTATCCACTCAAAATAATACCCCTGCAATTCTCAATAGATTATGCTATCCAAAGTGGGCATTAGAGGGTTTCATAA
TTGTAAATGCAAAAAGGTATCCTGGAGTTTGGCTTATAACTCGCTGTGGGTTGTTGTTCAGAAGTCGTTTCGACATTCAT
CATTACATGCTCTGTATTTTGGTTCTGTTTATGTATGGTCTGTTCTTCAGAATTGTTGCATTTGTGGCCTTGATTTTAGT
GAAGAAGAGATGAGCAGAGGGCAATTGCACCAACTTTTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50428.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis