Browse Element(s) Details


OsAffx.27771.1.S1_x_at

Description tigr:9630.m04289
TID=OsAffx.27771.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4435011/11AT hook motif-containing protein, putative
LOC_Os06g0949011/11AT hook motif-containing protein, putative
LOC_Os06g225007/11hypothetical protein
LOC_Os04g118503/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44310Os.9318.1.S1_at11/112+26799119..26799953Cortical cell delineating protein precursor, putative, expressed
LOC_Os02g44320Os.12829.1.S1_at11/112+26808768..26809673Cortical cell delineating protein precursor, putative, expressed
LOC_Os02g44330Os.49719.1.S1_at11/112+26814539..26817515YbaK/prolyl-tRNA synthetases associated domain containing protein, expressed
LOC_Os02g44340Os.50545.1.S1_at11/112+26817767..26820004expressed protein
LOC_Os02g44350OsAffx.27771.1.S1_x_at11/112+26822577..26824805AT hook motif-containing protein, putative
LOC_Os02g44350OsAffx.27771.2.S1_s_at11/112+26822577..26824805AT hook motif-containing protein, putative
LOC_Os02g44360Os.2406.2.S1_a_at11/112+26835716..26838437GRAS family transcription factor containing protein, expressed
LOC_Os02g44370Os.21578.1.S1_at11/112+26846213..26849103GRAS family transcription factor containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27771.1.S1_x_at--674--1253Chr06:4834397..4834421 (25 bp)
AGATTTACCATAGCTTTGATTCTGT
LOC_Os06g09490
OsAffx.27771.1.S1_x_at--146--2313Chr06:4834476..4834500 (25 bp)
AAATGGCCTCTCTCCACATGAGCTG
LOC_Os06g09490
OsAffx.27771.1.S1_x_at--710--9195Chr06:4834488..4834512 (25 bp)
TCCACATGAGCTGAAAGTTAAGGTC
LOC_Os06g09490
OsAffx.27771.1.S1_x_at--981--9074Chr06:4834521..4834545 (25 bp)
TGCTATTCTCCTCCGCAACCTTGAT
LOC_Os06g09490
OsAffx.27771.1.S1_x_at--1100--2996Chr09:311049..311073 (25 bp)
AATGATCAGGGCATTCCAAGACAAT
NONE
OsAffx.27771.1.S1_x_at--697--9512Chr06:4834666..4834690 (25 bp)
TCTCTGTCTCCTTCAGATGATATTT
LOC_Os06g09490
OsAffx.27771.1.S1_x_at--340--6292Chr06:4834681..4834705 (25 bp)
GATGATATTTCCCTTTCTTTCAAGT
LOC_Os06g09490
OsAffx.27771.1.S1_x_at--522--5555Chr06:4834712..4834736 (25 bp)
GAAAGCAATTTCCAATACGTCTAAG
LOC_Os06g09490
OsAffx.27771.1.S1_x_at--1055--5275Chr09:311251..311270 (20 bp)
GAATGTCGGTATCTATCTTCCAGAG
NONE
OsAffx.27771.1.S1_x_at--1040--435Chr09:311256..311280 (25 bp)
ATCTATCTTCCAGAGCCTGTATTCT
NONE
OsAffx.27771.1.S1_x_at--173--5333Chr06:4834891..4834915 (25 bp)
GAAGTGCACCCCACAGGAAGGAGCA
LOC_Os06g09490
Target Sequence 
AGATTTACCATAGCTTTGATTCTGTNGATGATGATTCCCAAAATAACTANCCTTTGGACTTTCTTAACACGATAACTCNA
AATGGCCTCTCTCCACATGAGCTGAAAGTTAAGGTCAACTNCCATGCTATTCTCCTCCGCAACCTTGATCCTANCAATGG
ATTATGCAANGGAACAAGATTAATGATCAGGGCATTCCAAGACAATGCAATTGATGCTGAAATCGTTGGTGGANATCATG
CACGAAAAAGGGTGTTCATACCAAGGATCTCTCTGTCTCCTTCAGATGATATTTCCCTTTCTTTCAAGTTTAAGAGAAAG
CAATTTCCAATACGTCTAAGTTTCGCAATGACAATTAATAAATCACAGGGACAAACCATCCNGAATGTCGGTATCTATCT
TCCAGAGCCTGTATTCTCGCATGGGCAACTTTATGTTGCATTATCAAGAGGGGTGTCGAGAAAAACGACAAAGATTTTGG
CAAAGCCTAAAAAAGAAGTGCACCCCACAGGAAGGAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27771.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis