Browse Element(s) Details


Os.12829.1.S1_at

Description gb:AK058218.1
DB_XREF= gi:32968236
TID=Os.12829.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12829 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-010-F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-010-F04, full insert sequence.
FL= gb:AK058218.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4432011/11Cortical cell delineating protein precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44280OsAffx.24720.1.S1_at11/112+26784122..26785006hypothetical protein
LOC_Os02g44290Os.52688.1.S1_at11/112+26791456..26793339PAP2 superfamily protein, expressed
LOC_Os02g44300Os.14380.1.S1_at11/112+26793804..26796449MSP domain containing protein, expressed
LOC_Os02g44300Os.14380.1.S1_s_at11/112+26793804..26796449MSP domain containing protein, expressed
LOC_Os02g44300Os.52680.1.S1_at11/112+26793804..26796449MSP domain containing protein, expressed
LOC_Os02g44300OsAffx.12491.1.S1_at10/112+26793804..26796449MSP domain containing protein, expressed
LOC_Os02g44300OsAffx.12491.1.S1_x_at10/112+26793804..26796449MSP domain containing protein, expressed
LOC_Os02g44310Os.9318.1.S1_at11/112+26799119..26799953Cortical cell delineating protein precursor, putative, expressed
LOC_Os02g44320Os.12829.1.S1_at11/112+26808768..26809673Cortical cell delineating protein precursor, putative, expressed
LOC_Os02g44330Os.49719.1.S1_at11/112+26814539..26817515YbaK/prolyl-tRNA synthetases associated domain containing protein, expressed
LOC_Os02g44340Os.50545.1.S1_at11/112+26817767..26820004expressed protein
LOC_Os02g44350OsAffx.27771.1.S1_x_at11/112+26822577..26824805AT hook motif-containing protein, putative
LOC_Os02g44350OsAffx.27771.2.S1_s_at11/112+26822577..26824805AT hook motif-containing protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12829.1.S1_at--648--9911Chr02:26809196..26809220 (25 bp)
TACTGCGGCAAGAACGTCCCTAGTG
LOC_Os02g44320
Os.12829.1.S1_at--500--9311Chr02:26809212..26809236 (25 bp)
TCCCTAGTGGCTTCATCTGTGCTTA
LOC_Os02g44320
Os.12829.1.S1_at--183--3891Chr02:26809228..26809252 (25 bp)
CTGTGCTTAAGCTACGTAACGCGCG
LOC_Os02g44320
Os.12829.1.S1_at--46--2611Chr02:26809245..26809269 (25 bp)
AACGCGCGTACGGTGTAACGACGTG
LOC_Os02g44320
Os.12829.1.S1_at--850--2591Chr02:26809261..26809285 (25 bp)
AACGACGTGCTAGCTTTGCATGCAT
LOC_Os02g44320
Os.12829.1.S1_at--230--10631Chr02:26809311..26809335 (25 bp)
TTCGTTCTTGAGTGCCTGCATGCAT
LOC_Os02g44320
Os.12829.1.S1_at--382--4471Chr02:26809324..26809348 (25 bp)
GCCTGCATGCATATCGGTCGAGTCT
LOC_Os02g44320
Os.12829.1.S1_at--112--7811Chr02:26809339..26809363 (25 bp)
GGTCGAGTCTTTACTTACTCTGTTA
LOC_Os02g44320
Os.12829.1.S1_at--635--3071Chr02:26809442..26809466 (25 bp)
AATCAGTTTCTGTCATCATTTGGTC
LOC_Os02g44320
Os.12829.1.S1_at--204--5231Chr02:26809524..26809548 (25 bp)
GAATTTGGCGTGTCTATGTCTGGGT
LOC_Os02g44320
Os.12829.1.S1_at--72--3131Chr02:26809557..26809581 (25 bp)
AATTTGCTTGCAGTACGTTCTCGTA
LOC_Os02g44320
Target Sequence 
TACTGCGGCAAGAACGTCCCTAGTGGCTTCATCTGTGCTTAAGCTACGTAACGCGCGTACGGTGTAACGACGTGCTAGCT
TTGCATGCATGCAGCACGCATGCACGAACACATCGTTCGTTCTTGAGTGCCTGCATGCATATCGGTCGAGTCTTTACTTA
CTCTGTTATTAGTTCTGAATGTAGAACTGCTTCAGATATCAATCCAGCGAGTTAANNCTGTACTTGATTTGTTTATGTTT
CTTCAGTTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTGTTCTCNCAAGGAATTGCATGCAATGGATAC
TCTTTTAGATTGAATTTGGCGTGTCTATGTCTGGGTGTGGTTGTAATTTGCTTGCAGTACGTTCTCGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12829.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis