Browse Element(s) Details


OsAffx.24720.1.S1_at

Description tigr:9630.m04283
TID=OsAffx.24720.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4428011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44220Os.5452.1.A1_s_at11/112+26756776..26760516Pex19 protein family protein, expressed
LOC_Os02g44230Os.6092.1.S1_at11/112+26761738..26765754trehalose-phosphatase family protein, expressed
LOC_Os02g44240OsAffx.12489.1.S1_at10/112+26766757..26767769hypothetical protein
LOC_Os02g44250Os.54704.1.S1_at10/112+26773435..26774394expressed protein
LOC_Os02g44260OsAffx.12490.1.S1_at10/112+26775727..26776764zinc-binding protein, putative
LOC_Os02g44260OsAffx.21876.1.S1_at1/112+26775727..26776764zinc-binding protein, putative
LOC_Os02g44270Os.52516.2.S1_x_at11/112+26778665..26782123expressed protein
LOC_Os02g44270Os.52516.1.S1_x_at9/112+26778665..26782123expressed protein
LOC_Os02g44280OsAffx.24720.1.S1_at11/112+26784122..26785006hypothetical protein
LOC_Os02g44290Os.52688.1.S1_at11/112+26791456..26793339PAP2 superfamily protein, expressed
LOC_Os02g44300Os.14380.1.S1_at11/112+26793804..26796449MSP domain containing protein, expressed
LOC_Os02g44300Os.14380.1.S1_s_at11/112+26793804..26796449MSP domain containing protein, expressed
LOC_Os02g44300Os.52680.1.S1_at11/112+26793804..26796449MSP domain containing protein, expressed
LOC_Os02g44300OsAffx.12491.1.S1_at10/112+26793804..26796449MSP domain containing protein, expressed
LOC_Os02g44300OsAffx.12491.1.S1_x_at10/112+26793804..26796449MSP domain containing protein, expressed
LOC_Os02g44310Os.9318.1.S1_at11/112+26799119..26799953Cortical cell delineating protein precursor, putative, expressed
LOC_Os02g44320Os.12829.1.S1_at11/112+26808768..26809673Cortical cell delineating protein precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24720.1.S1_at--685--4011Chr02:26784657..26784681 (25 bp)
CGTCGCGGCAGGTTGTCGAGATTAT
LOC_Os02g44280
OsAffx.24720.1.S1_at--1044--3471Chr02:26784649..26784673 (25 bp)
CAGGTTGTCGAGATTATCTTCCTCT
LOC_Os02g44280
OsAffx.24720.1.S1_at--1032--7211Chr02:26784643..26784667 (25 bp)
GTCGAGATTATCTTCCTCTCGTCGT
LOC_Os02g44280
OsAffx.24720.1.S1_at--577--5151Chr02:26784426..26784450 (25 bp)
GCAACGAGATGATGCGCTTCTCCCC
LOC_Os02g44280
OsAffx.24720.1.S1_at--1064--4271Chr02:26784394..26784418 (25 bp)
CCTGATGACGGGTGCTCCTCGGCCG
LOC_Os02g44280
OsAffx.24720.1.S1_at--88--1831Chr02:26784360..26784384 (25 bp)
ACGCGCTGCGTATCCGGACGTTCGA
LOC_Os02g44280
OsAffx.24720.1.S1_at--778--4531Chr02:26784353..26784377 (25 bp)
GCGTATCCGGACGTTCGACGGCAGC
LOC_Os02g44280
OsAffx.24720.1.S1_at--580--4431Chr02:26784283..26784307 (25 bp)
GCCATGTTCCTGTGCAGGGTGATCG
LOC_Os02g44280
OsAffx.24720.1.S1_at--377--10671Chr02:26784277..26784301 (25 bp)
TTCCTGTGCAGGGTGATCGCCGGCC
LOC_Os02g44280
OsAffx.24720.1.S1_at--91--5871Chr02:26784208..26784232 (25 bp)
GAGCCCGTGCCCAGCAAGGAGTACG
LOC_Os02g44280
OsAffx.24720.1.S1_at--1152--1471Chr02:26784196..26784220 (25 bp)
AGCAAGGAGTACGACTCCGTCCGCG
LOC_Os02g44280
Target Sequence 
CGTCGCGGCAGGTTGTCGAGATTATCTTCCTCTCGTCGTGGTCTCCGCTTCCGGCGACACAGGCGGCTTTGCCCGCCGCG
GTAGCTTCCACCGCCGCCGCCGGCGCGTCAACGGCAGAGGTGGAGATGCTGTTCCGCGTCCACAACCCCGCGCGCGCCGT
GGCGCGCTTCGAGGACTACCGCGCCGCCGTGCGCGCTCGGGCCGGTGGGGCCTCCCGCAGCGCCGCCGACGGCAACGAGA
TGATGCGCTTCTCCCCGGCGCCGCCTGATGACGGGTGCTCCTCGGCCGCGGGCGAGGACGCGCTGCGTATCCGGACGTTC
GACGGCAGCGGCGGCGCGCACGCCAACGGGCGCGGGCCGGCGTCCGGCAGGCGGGCCATGTTCCTGTGCAGGGTGATCGC
CGGCCGCGTGGCGGATGGGCCAGCAACCTCCGGCGCCGGAGCCGACGCCGAGCCCGTGCCCAGCAAGGAGTACGACTCCG
TCCGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24720.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis