Browse Element(s) Details


Os.5452.1.A1_s_at

Description gb:AU166277
DB_XREF= gi:12404676
DB_XREF=AU166277
CLONE=C10313
TID=Os.5452.1
CNT=9
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.5452 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_186999.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4422011/11Pex19 protein family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44160NANA2+26730662..26731855hypothetical protein
LOC_Os02g44170NANA2+26732274..26732945retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g44180Os.38751.1.A1_at5/112+26735523..26740760retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g44180OsAffx.27810.1.S1_x_at1/112+26735523..26740760retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g44180OsAffx.8338.1.S1_x_at1/112+26735523..26740760retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g44190OsAffx.22385.1.S1_x_at6/112+26741831..26744252retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g44190OsAffx.20329.1.S1_at3/112+26741831..26744252retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g44200OsAffx.24719.1.S1_at11/112+26749058..26751276thioesterase family protein
LOC_Os02g44210OsAffx.2955.1.S1_at11/112+26754041..26754565hypothetical protein
LOC_Os02g44220Os.5452.1.A1_s_at11/112+26756776..26760516Pex19 protein family protein, expressed
LOC_Os02g44230Os.6092.1.S1_at11/112+26761738..26765754trehalose-phosphatase family protein, expressed
LOC_Os02g44240OsAffx.12489.1.S1_at10/112+26766757..26767769hypothetical protein
LOC_Os02g44250Os.54704.1.S1_at10/112+26773435..26774394expressed protein
LOC_Os02g44260OsAffx.12490.1.S1_at10/112+26775727..26776764zinc-binding protein, putative
LOC_Os02g44260OsAffx.21876.1.S1_at1/112+26775727..26776764zinc-binding protein, putative
LOC_Os02g44270Os.52516.2.S1_x_at11/112+26778665..26782123expressed protein
LOC_Os02g44270Os.52516.1.S1_x_at9/112+26778665..26782123expressed protein
LOC_Os02g44280OsAffx.24720.1.S1_at11/112+26784122..26785006hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007031biological_processperoxisome organization and biogenesis
GO:0005777cellular_componentperoxisome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5452.1.A1_s_at--647--6431Chr02:26758625..26758649 (25 bp)
GATCTTGTTCAAGACATTGCTCCAG
LOC_Os02g44220
Os.5452.1.A1_s_at--540--8711Chr02:26757235..26757258 (24 bp)
TGTCTCCGGAGATGCTTGAATCAGC
LOC_Os02g44220
Os.5452.1.A1_s_at--1035--8991Chr02:26757162..26757186 (25 bp)
TGAAGTAGCTACCTTATCTCTACCC
LOC_Os02g44220
Os.5452.1.A1_s_at--254--251Chr02:26757008..26757032 (25 bp)
ATATCCGTTTGCCTTGTGCGAGGTG
LOC_Os02g44220
Os.5452.1.A1_s_at--1031--651Chr02:26756965..26756989 (25 bp)
ATGCACAAGTTATGTCGGAGGCAAC
LOC_Os02g44220
Os.5452.1.A1_s_at--148--7191Chr02:26756952..26756976 (25 bp)
GTCGGAGGCAACTCTTAACAAGAAA
LOC_Os02g44220
Os.5452.1.A1_s_at--611--1531Chr02:26756906..26756930 (25 bp)
AGCATGCTGCATGCACAGTGCAATG
LOC_Os02g44220
Os.5452.1.A1_s_at--347--9011Chr02:26756888..26756912 (25 bp)
TGCAATGCAAATCACAAGGACGTAA
LOC_Os02g44220
Os.5452.1.A1_s_at--272--8111Chr02:26756871..26756895 (25 bp)
GGACGTAATGTGACGCTCACCATGT
LOC_Os02g44220
Os.5452.1.A1_s_at--752--9671Chr02:26756855..26756879 (25 bp)
TCACCATGTCACGTTGTTCCGCTTT
LOC_Os02g44220
Os.5452.1.A1_s_at--241--6711Chr02:26756840..26756864 (25 bp)
GTTCCGCTTTCCTTTCATATGTTTT
LOC_Os02g44220
Target Sequence 
GATCTTGTTCAAGACATTGCTCCAGATCTTGATCTGAGCAAGTTGGGACNACTGTCTCCGGAGATGCTTGAATCAGCACC
NAATTGCTGTGTAATGTGATGAGTAAAACATTCCGTTATGGATTATGAAGTAGCTACCTTATCTCTACCCTTTCCCTAAA
GTTACTTTCATATGGATCAATTGTAAAGCTTCACAGATACATATGAACTCAATGTTTTCTTATTCTTTAGCGAAAGATAC
ATTTGTTCGAATTGATGTACTGTGAAAGGGAAGAAAAATATATCCGTTTGCCTTGTGCGAGGTGTGCAATGTGCAATCNT
GAATGCACAAGTTATGTCGGAGGCAACTCTTAACAAGAAAAGGATATTGCTGAATTTGTGAAGCATGCTGCATGCACAGT
GCAATGCAAATCACAAGGACGTAATGTGACGCTCACCATGTCACGTTGTTCCGCTTTCCTTTCATATGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5452.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis