Browse Element(s) Details


Os.54963.1.S1_at

Description gb:AK107201.1
DB_XREF= gi:32992410
TID=Os.54963.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54963 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-125-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-125-B03, full insert sequence.
FL= gb:AK107201.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1189011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g11830Os.53807.1.S2_at11/114+6470913..6475626PCF2 DNA binding protein, putative, expressed
LOC_Os04g11830Os.53807.1.S1_at11/114+6470913..6475626PCF2 DNA binding protein, putative, expressed
LOC_Os04g11840NANA4+6479161..6479631hypothetical protein
LOC_Os04g11850Os.51062.1.S1_at5/114+6481594..6483296hypothetical protein
LOC_Os04g11850Os.51062.1.S1_x_at4/114+6481594..6483296hypothetical protein
LOC_Os04g11850OsAffx.27771.2.S1_s_at4/114+6481594..6483296hypothetical protein
LOC_Os04g11850OsAffx.27771.1.S1_x_at3/114+6481594..6483296hypothetical protein
LOC_Os04g11850Os.53560.1.S1_at2/114+6481594..6483296hypothetical protein
LOC_Os04g11850Os.36875.1.A1_at1/114+6481594..6483296hypothetical protein
LOC_Os04g11860OsAffx.13781.1.S1_at11/114+6484277..6485222hypothetical protein
LOC_Os04g11870NANA4+6490557..6491107hypothetical protein
LOC_Os04g11880Os.8814.1.S1_at11/114+6491586..6498899Vacuolar assembly protein VPS41 homolog, putative, expressed
LOC_Os04g11890Os.54963.1.S1_at11/114+6500544..6502281F-box domain containing protein, expressed
LOC_Os04g11900OsAffx.13933.1.S1_x_at1/114+6504942..6506369hypothetical protein
LOC_Os04g11910OsAffx.28472.1.S1_x_at11/114+6508556..6515588Transposable element protein, putative, MuDR
LOC_Os04g11910OsAffx.17848.5.S1_x_at4/114+6508556..6515588Transposable element protein, putative, MuDR
LOC_Os04g11910OsAffx.17848.1.S1_x_at2/114+6508556..6515588Transposable element protein, putative, MuDR
LOC_Os04g11910OsAffx.17848.3.S1_x_at2/114+6508556..6515588Transposable element protein, putative, MuDR
LOC_Os04g11910OsAffx.19815.1.S1_at1/114+6508556..6515588Transposable element protein, putative, MuDR
LOC_Os04g11910OsAffx.17848.2.S1_x_at1/114+6508556..6515588Transposable element protein, putative, MuDR
LOC_Os04g11920NANA4+6520383..6523255retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g11930Os.10827.1.S1_x_at10/114+6527270..6530555transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g11930Os.46055.2.S1_x_at5/114+6527270..6530555transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54963.1.S1_at--86--3911Chr04:6501228..6501252 (25 bp)
CTGGTCTACATTCAGAGCTCTGTGT
LOC_Os04g11890
Os.54963.1.S1_at--875--8791Chr04:6501206..6501230 (25 bp)
TGTTCTTGTTTCTGTGTGACACCAA
LOC_Os04g11890
Os.54963.1.S1_at--319--2111Chr04:6501149..6501173 (25 bp)
ACATGCTTCCATGTGCTATGAGGCA
LOC_Os04g11890
Os.54963.1.S1_at--1151--2351Chr04:6501113..6501137 (25 bp)
AAAGCCTTGTCAACCATGCGTTCTT
LOC_Os04g11890
Os.54963.1.S1_at--958--10371Chr04:6501050..6501074 (25 bp)
TTTTCTGTGGTCTGTAGCATACGCT
LOC_Os04g11890
Os.54963.1.S1_at--6--7131Chr04:6501014..6501038 (25 bp)
GTCATTGTTTTGCTTACCCCTGCAA
LOC_Os04g11890
Os.54963.1.S1_at--949--7711Chr04:6500749..6500773 (25 bp)
GGGTGTAATGGTGTGCCGCATCTTA
LOC_Os04g11890
Os.54963.1.S1_at--999--4211Chr04:6500734..6500758 (25 bp)
CCGCATCTTAGCCTGATTGGTCTAA
LOC_Os04g11890
Os.54963.1.S1_at--878--9351Chr04:6500668..6500692 (25 bp)
TCGAATGTATATCCTGCTGCCTTAG
LOC_Os04g11890
Os.54963.1.S1_at--212--4791Chr04:6500653..6500677 (25 bp)
GCTGCCTTAGTTCCTGCCTTGAAAA
LOC_Os04g11890
Os.54963.1.S1_at--682--8171Chr04:6500583..6500607 (25 bp)
GGAACCATGGGTTATCCTTTTGAAT
LOC_Os04g11890
Target Sequence 
CTGGTCTACATTCAGAGCTCTGTGTTCTTGTTTCTGTGTGACACCAAGGGGAATTTGCGGGAGAAAATCCATTTGGATAA
CATGCTTCCATGTGCTATGAGGCATTGTTTGAAAGAAAGCCTTGTCAACCATGCGTTCTTCGGGAGGCATGGTGGTGCTC
ATGTGGGACAGCCACAGTTTTTCTGTGGTCTGTAGCATACGCTGGTGCTGCTCCGTCATTGTTTTGCTTACCCCTGCAAA
GTGTAGAAGGGGACAAGGACTTGAGGAGTTTGAGTAGGGGGTTATATTTTGCAGATATTTGGCAATGGTAATTTTTAATC
GGACCAAAGAATGATTGTCTTATGTGGTGACTGGAGCTGTAGATCTTCTGGGTGTAATGGTGTGCCGCATCTTAGCCTGA
TTGGTCTAAATTTTCTGATTCTACAATGAATTTATCTTCTAGTAATTAACTCGAATGTATATCCTGCTGCCTTAGTTCCT
GCCTTGAAAACTAGTTGATTGGATGTAGACATATAGTTTCCATGGTTTAATAGAGGGAACCATGGGTTATCCTTTTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54963.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis