Browse Element(s) Details


OsAffx.17848.2.S1_x_at

Description tigr:9630.m03289
TID=OsAffx.17848.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3455010/11Transposable element protein, putative, MuDR
LOC_Os01g268563/11Transposable element protein, putative, MuDR
LOC_Os01g269803/11Transposable element protein, putative, MuDR
LOC_Os09g224002/11hypothetical protein
LOC_Os05g320302/11hypothetical protein
LOC_Os08g249602/11hypothetical protein
LOC_Os08g249801/11Zinc knuckle family protein
LOC_Os06g255701/11hypothetical protein
LOC_Os04g119101/11Transposable element protein, putative, MuDR
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34510Os.5911.1.S1_at11/112+20679728..20681922Vacuolar ATP synthase 16 kDa proteolipid subunit, putative, expressed
LOC_Os02g34520NANA2+20683402..20688269retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g34530OsAffx.12349.1.S1_at11/112+20694520..20696830Thioredoxin family protein, expressed
LOC_Os02g34540Os.55551.1.S1_at11/112+20697850..20699039TPR Domain containing protein, expressed
LOC_Os02g34550OsAffx.17848.2.S1_at10/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.2.S1_x_at10/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.4.S1_x_at6/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.1.S1_at5/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.3.S1_x_at4/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.5.S1_x_at4/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550Os.54363.1.S1_at3/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.1.S1_x_at3/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.4.S1_at2/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34560Os.21046.1.S1_at11/112+20712022..20716037Neutral/alkaline invertase, putative, expressed
LOC_Os02g34570Os.53185.1.S1_at11/112+20722469..207257703' exoribonuclease family, domain 2 containing protein, expressed
LOC_Os02g34570Os.3282.2.S1_x_at1/112+20722469..207257703' exoribonuclease family, domain 2 containing protein, expressed
LOC_Os02g34580Os.49050.1.S1_at11/112+20728208..20731448Ammonium transporter 2, putative, expressed
LOC_Os02g34590Os.11567.1.S1_a_at11/112+20732046..20735137transposon protein, putative, unclassified, expressed
LOC_Os02g34590Os.11567.1.S2_a_at11/112+20732046..20735137transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17848.2.S1_x_at--917--2992Chr02:20708312..20708336 (25 bp)
AATGATTCCTCAAATGGCTCCCGAT
LOC_Os02g34550
OsAffx.17848.2.S1_x_at--316--6275Chr05:18583482..18583506 (25 bp)
GATGTGCCAACCTCACACTGGCAAG
LOC_Os05g32030
OsAffx.17848.2.S1_x_at--861--6511Chr02:20708362..20708644 (25 bp)
GATTTGCACCTTTTGCAGGGCCTAC
LOC_Os02g34550
OsAffx.17848.2.S1_x_at--809--3031Chr02:20708698..20708835 (25 bp)
AATCCATGGATTACGATGCACGTCG
LOC_Os02g34550
OsAffx.17848.2.S1_x_at--503--8991Chr02:20708828..20708851 (24 bp)
TGCACGTCGTTTGATGGTGGAGTAC
LOC_Os02g34550
OsAffx.17848.2.S1_x_at--1138--10199Chr09:13530269..13530292 (24 bp)
TATTTGGTCAATATTCCTCGCATCC
LOC_Os09g22400
OsAffx.17848.2.S1_x_at--830--10171NONE
TATATGCAAGCACCGTCAACAGGGT
NONE
OsAffx.17848.2.S1_x_at--544--7051Chr02:20709024..20709048 (25 bp)
GTCATTTCGCCCTGAACCAATGTCA
LOC_Os02g34550
OsAffx.17848.2.S1_x_at--1078--7991Chr02:20709097..20709175 (25 bp)
GGAGGGTCGTCACCGGCCACACAAC
LOC_Os02g34550
OsAffx.17848.2.S1_x_at--1126--6935Chr09:13530598..13530621 (24 bp)
GTAGATCTAACCGTGAGCGCCATGA
LOC_Os09g22400
OsAffx.17848.2.S1_x_at--27--2371Chr02:20709297..20709321 (25 bp)
AAAGCGAGGTGAAACATCTAGGACT
LOC_Os02g34550
Target Sequence 
AATGATTCCTCAAATGGCTCCCGATGTGCCAACCTCACACTGGCAAGGAGGATTTGCACCTTTTGCAGGGCCTACTCAGT
CGGTTCCACTGCATCCACCTACATATGGCACCAACTCATGGCAAGGACAATCCATGGATTACGATGCACGTCGTTTGATG
GTGGAGTACAGGGTTATATGGACTTGTTGCAACAAGGTGATTGGCTATTTGGTCAATATTCCTCGCATCCTAATGAAATT
CCATATATGCAAGCACCGTCAACAGGGTCATTTCGCCCTGAACCAATGTCAGGGTTTAGGCCTTACACTGCATCGTACGG
CGACATGTCCAGCTTCGGTGGAGGGTCGTCACCGGCCACACAACCAGAGGTTGGCGAAGGAAATGACAATGACCCGCGTA
GATCTAACCGTGAGCGCCATGAGCCAAACCGTATGTCACTCTCAGGCCCTCGACATGCCGCAGGACAAAGGAAAAAAACT
ACAAAAAAGCGAGGTGAAACATCTAGGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17848.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis