Browse Element(s) Details


Os.21046.1.S1_at

Description gb:AK102741.1
DB_XREF= gi:32987950
TID=Os.21046.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21046 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033106F23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033106F23, full insert sequence.
FL= gb:AK102741.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3456011/11Neutral/alkaline invertase, putative, expressed
LOC_Os10g406201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34520NANA2+20683402..20688269retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g34530OsAffx.12349.1.S1_at11/112+20694520..20696830Thioredoxin family protein, expressed
LOC_Os02g34540Os.55551.1.S1_at11/112+20697850..20699039TPR Domain containing protein, expressed
LOC_Os02g34550OsAffx.17848.2.S1_at10/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.2.S1_x_at10/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.4.S1_x_at6/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.1.S1_at5/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.3.S1_x_at4/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.5.S1_x_at4/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550Os.54363.1.S1_at3/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.1.S1_x_at3/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34550OsAffx.17848.4.S1_at2/112+20702585..20709351Transposable element protein, putative, MuDR
LOC_Os02g34560Os.21046.1.S1_at11/112+20712022..20716037Neutral/alkaline invertase, putative, expressed
LOC_Os02g34570Os.53185.1.S1_at11/112+20722469..207257703' exoribonuclease family, domain 2 containing protein, expressed
LOC_Os02g34570Os.3282.2.S1_x_at1/112+20722469..207257703' exoribonuclease family, domain 2 containing protein, expressed
LOC_Os02g34580Os.49050.1.S1_at11/112+20728208..20731448Ammonium transporter 2, putative, expressed
LOC_Os02g34590Os.11567.1.S1_a_at11/112+20732046..20735137transposon protein, putative, unclassified, expressed
LOC_Os02g34590Os.11567.1.S2_a_at11/112+20732046..20735137transposon protein, putative, unclassified, expressed
LOC_Os02g34600Os.11782.1.S1_at11/112+20740496..20745452Serine/threonine-protein kinase SAPK7, putative, expressed
LOC_Os02g34600Os.54455.1.S1_at1/112+20740496..20745452Serine/threonine-protein kinase SAPK7, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004564molecular_functionbeta-fructofuranosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21046.1.S1_at--80--8591Chr02:20712408..20712432 (25 bp)
TGGTTTCAATCCCTGCTTGTAAGAA
LOC_Os02g34560
Os.21046.1.S1_at--889--2352Chr12:17547538..17547567 (25 bp)
AAAGCTCATTTTTCTGCAGTGCCTC
NONE
Os.21046.1.S1_at--1066--4451Chr02:20712277..20712301 (25 bp)
GCCTCCTATCCAGAGGGTTCGTTAA
LOC_Os02g34560
Os.21046.1.S1_at--938--7891Chr02:20712262..20712286 (25 bp)
GGTTCGTTAACTTGCTGCCTGAGAA
LOC_Os02g34560
Os.21046.1.S1_at--1056--5171Chr02:20712235..20712259 (25 bp)
GCAAGTCATACAAACTGTGTGCCTT
LOC_Os02g34560
Os.21046.1.S1_at--489--8671Chr02:20712220..20712244 (25 bp)
TGTGTGCCTTGTATGTTTCTTCCTC
LOC_Os02g34560
Os.21046.1.S1_at--372--6411Chr02:20712149..20712173 (25 bp)
GATCTTGGCAAAAGCTTTTCCCTGG
LOC_Os02g34560
Os.21046.1.S1_at--63--8612Chr10:21458072..21458277 (25 bp)
TGGTCCCCTGGTTGGATATCACAGT
LOC_Os10g40620
Os.21046.1.S1_at--145--7951Chr02:20712114..20712138 (25 bp)
GGATATCACAGTATCTTGGGTTCTT
LOC_Os02g34560
Os.21046.1.S1_at--128--3611Chr02:20712085..20712109 (25 bp)
CATTGTTGGAACATGCTTGCTAGTT
LOC_Os02g34560
Os.21046.1.S1_at--1021--8031Chr02:20712032..20712056 (25 bp)
GGAGTTATCTCAACGACTTTATCTT
LOC_Os02g34560
Target Sequence 
TGGTTTCAATCCCTGCTTGTAAGAAGATTCCTGCTTTGGGTCAAAAATCTTAAAGCTGATTCCAGTTTCCTGGTCTTTTG
ATGGAGAGAAGTGCTACTCTAACGAATAATAAAAGCTCATTTTTCTGCAGTGCCTCCTATCCAGAGGGTTCGTTAACTTG
CTGCCTGAGAAGGGCAAGTCATACAAACTGTGTGCCTTGTATGTTTCTTCCTCTTTTCGTTCTCTTACAAAATTGAAGTT
GTACTTGTGTTCAAGGAAAGATCTTGGCAAAAGCTTTTCCCTGGTCCCCTGGTTGGATATCACAGTATCTTGGGTTCTTG
AGACATTGTTGGAACATGCTTGCTAGTTTGTGCAAGCAAGTGATAATAATTCATTTGGAGTTATCTCAACGACTTTATCT
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21046.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis