Browse Element(s) Details


OsAffx.17848.5.S1_x_at

Description tigr:9633.m02934
TID=OsAffx.17848.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3203010/11hypothetical protein
LOC_Os01g269807/11Transposable element protein, putative, MuDR
LOC_Os01g268565/11Transposable element protein, putative, MuDR
LOC_Os04g119104/11Transposable element protein, putative, MuDR
LOC_Os09g224004/11hypothetical protein
LOC_Os02g345504/11Transposable element protein, putative, MuDR
LOC_Os08g249802/11Zinc knuckle family protein
LOC_Os08g249602/11hypothetical protein
LOC_Os06g255701/11hypothetical protein
LOC_Os07g012401/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g31979NANA5+18562248..18562525NA
LOC_Os05g31990NANA5+18566967..18568081retrotransposon protein, putative, unclassified
LOC_Os05g32000NANA5+18570469..18572167transposase related protein, putative
LOC_Os05g32010NANA5+18573019..18573456hypothetical protein
LOC_Os05g32020NANA5+18574453..18574707hypothetical protein
LOC_Os05g32030OsAffx.17848.5.S1_at11/115+18580296..18584516hypothetical protein
LOC_Os05g32030OsAffx.17848.5.S1_x_at10/115+18580296..18584516hypothetical protein
LOC_Os05g32030OsAffx.17848.1.S1_x_at3/115+18580296..18584516hypothetical protein
LOC_Os05g32030OsAffx.17848.4.S1_x_at3/115+18580296..18584516hypothetical protein
LOC_Os05g32030OsAffx.17848.3.S1_x_at3/115+18580296..18584516hypothetical protein
LOC_Os05g32030OsAffx.17848.4.S1_at2/115+18580296..18584516hypothetical protein
LOC_Os05g32030OsAffx.17848.2.S1_x_at2/115+18580296..18584516hypothetical protein
LOC_Os05g32030Os.54363.1.S1_at2/115+18580296..18584516hypothetical protein
LOC_Os05g32040NANA5+18586482..18588665retrotransposon protein, putative, unclassified
LOC_Os05g32050NANA5+18589211..18595049retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g32060Os.22774.1.S1_at11/115+18597636..18602300expressed protein
LOC_Os05g32060Os.34979.1.S1_at10/115+18597636..18602300expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17848.5.S1_x_at--3--671Chr05:18583447..18583471 (25 bp)
ATGCAATGCCACAAATGATTTCTCA
LOC_Os05g32030
OsAffx.17848.5.S1_x_at--266--5095Chr05:18583515..18583621 (25 bp)
GCACCATTTGCAGGGACTAGCCAAG
LOC_Os05g32030
OsAffx.17848.5.S1_x_at--101--5717Chr06:14947212..14947232 (21 bp)
GACTAGCCAAGGTATCCCTACCATA
LOC_Os06g25570
OsAffx.17848.5.S1_x_at--253--4211Chr05:18583636..18583660 (25 bp)
CCCCAAATGCCTGCTGATTTTATCA
LOC_Os05g32030
OsAffx.17848.5.S1_x_at--707--6696Chr09:13530033..13530057 (25 bp)
GTTCCACTGCATGCACCTACATATG
LOC_Os09g22400
OsAffx.17848.5.S1_x_at--459--832Chr01:15362470..15362799 (25 bp)
ATGGATTACGGTGGGTCATTTCGCC
LOC_Os01g26980
OsAffx.17848.5.S1_x_at--717--7815Chr09:13530405..13530429 (25 bp)
GGTCATTTCGCCCTGAACTAATGTC
LOC_Os09g22400
OsAffx.17848.5.S1_x_at--315--9736Chr09:13530423..13530447 (25 bp)
TAATGTCAGGGTTTAGGCCTTACAC
LOC_Os09g22400
OsAffx.17848.5.S1_x_at--1103--3652Chr05:18584290..18584314 (25 bp)
CTTCACAAACTGATGATGCGCCCCA
LOC_Os05g32030
OsAffx.17848.5.S1_x_at--56--1278Chr09:13530599..13530623 (25 bp)
AGATCTAACCGTGAGCGCCATGAGC
LOC_Os09g22400
OsAffx.17848.5.S1_x_at--238--3211Chr05:18584460..18584484 (25 bp)
CAAGGTGGACCATCTAGGACTACGA
LOC_Os05g32030
Target Sequence 
ATGCAATGCCACAAATGATTTCTCAAATGGCTCCCGATGTGCCAACCTCACACTGGCAAGGAGGATTTGCACCATTTGCA
GGGACTAGCCAAGGTATCCCTACCATACCCCAAATGCCTGCTGATTTTATCAGACAAAGAGGGTTTACGTCGTTAGGCGG
GCCTACTCAGTCAGTTCCACTGCATGCACCTACATATGTCACCAACCCATGGCAAGGACAATCCATGGATTACGGTGGGT
CATTTCGCCCTGAACTAATGTCAGGGTTTAGGCCTTACACTGCATCGTACGGCGACATGTCCAGCTTCGGTGGAGGGTCG
TCATCGGTACCCAATGAGCTTCGGACTTCACAAACTGATGATGCGCCCCAAGTGACACAGCCCACACAACCAGAGGTTGG
GGAAGGAAACGACAATGACCCGCGCAGATCTAACCGTGAGCGCCATGAGCCAAACCGTCTGTCCCTCTCAGGCCCTCGAC
ATGCCGCAGGACAAAGGAAAAAAACTACAAAAAAGCAAGGTGGACCATCTAGGACTACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17848.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis