Browse Element(s) Details


OsAffx.17848.3.S1_x_at

Description tigr:9636.m02447
TID=OsAffx.17848.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc knuckle, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2498010/11Zinc knuckle family protein
LOC_Os09g224004/11hypothetical protein
LOC_Os02g345504/11Transposable element protein, putative, MuDR
LOC_Os05g320303/11hypothetical protein
LOC_Os01g268562/11Transposable element protein, putative, MuDR
LOC_Os01g269802/11Transposable element protein, putative, MuDR
LOC_Os04g119102/11Transposable element protein, putative, MuDR
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g24946Os.24244.1.A1_at11/118+14982163..14987965hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os08g24952OsAffx.29338.1.S1_x_at11/118+14989267..14997650expressed protein
LOC_Os08g24952Os.7275.1.S1_a_at11/118+14989267..14997650expressed protein
LOC_Os08g24960OsAffx.17848.5.S1_x_at2/118+15000819..15001310hypothetical protein
LOC_Os08g24960OsAffx.17848.2.S1_x_at2/118+15000819..15001310hypothetical protein
LOC_Os08g24960OsAffx.17848.1.S1_x_at1/118+15000819..15001310hypothetical protein
LOC_Os08g24970Os.45977.1.S1_at1/118+15005209..15008771retrotransposon protein, putative, unclassified
LOC_Os08g24980OsAffx.17848.3.S1_at10/118+15011958..15018047Zinc knuckle family protein
LOC_Os08g24980OsAffx.17848.3.S1_x_at10/118+15011958..15018047Zinc knuckle family protein
LOC_Os08g24980Os.54363.1.S1_at6/118+15011958..15018047Zinc knuckle family protein
LOC_Os08g24980OsAffx.17848.4.S1_x_at4/118+15011958..15018047Zinc knuckle family protein
LOC_Os08g24980OsAffx.17848.5.S1_x_at2/118+15011958..15018047Zinc knuckle family protein
LOC_Os08g24980OsAffx.17848.4.S1_at2/118+15011958..15018047Zinc knuckle family protein
LOC_Os08g24980OsAffx.17848.1.S1_x_at2/118+15011958..15018047Zinc knuckle family protein
LOC_Os08g24980OsAffx.17848.1.S1_at2/118+15011958..15018047Zinc knuckle family protein
LOC_Os08g24980OsAffx.17848.2.S1_x_at1/118+15011958..15018047Zinc knuckle family protein
LOC_Os08g24990NANA8+15023004..15029099retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g25000NANA8+15029410..15030030retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g25010Os.9649.1.S1_at7/118+15030438..15034156TBC domain containing protein, expressed
LOC_Os08g25010OsAffx.22944.1.S1_at1/118+15030438..15034156TBC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17848.3.S1_x_at--362--10693Chr09:13528559..13528672 (25 bp)
TTCCACCAGATGTGCACACGCAAAA
LOC_Os09g22400
OsAffx.17848.3.S1_x_at--624--9036Chr05:18582476..18582500 (25 bp)
TGCACTCAAGGATGACCCCATGGAT
LOC_Os05g32030
OsAffx.17848.3.S1_x_at--643--3314Chr04:6513598..6513622 (25 bp)
CACAGGCCTTGAATGATGTCGTCCA
LOC_Os04g11910
OsAffx.17848.3.S1_x_at--721--3095Chr09:13528801..13528825 (25 bp)
AATACATGGCCTGGTACTCATCGCA
LOC_Os09g22400
OsAffx.17848.3.S1_x_at--446--4131Chr08:15013010..15013123 (25 bp)
CGCTCACTTGACGACCGACATTGTA
LOC_Os08g24980
OsAffx.17848.3.S1_x_at--872--832Chr09:13529081..13529100 (20 bp)
ATGGAATCGCGGGTACCAACCAGGA
LOC_Os09g22400
OsAffx.17848.3.S1_x_at--904--8171Chr08:15012375..15012399 (25 bp)
GGAACGCTTATGGTCCGTCCCATGC
LOC_Os08g24980
OsAffx.17848.3.S1_x_at--916--2992Chr02:20708312..20708336 (25 bp)
AATGATTCCTCAAATGGCTCCCGAT
LOC_Os02g34550
OsAffx.17848.3.S1_x_at--1109--7937Chr09:13529740..13530024 (25 bp)
GGATTTGCACCATTTGCAGGGCCTA
LOC_Os09g22400
OsAffx.17848.3.S1_x_at--504--8991Chr08:15012002..15012024 (23 bp)
TGCAGGGCCTACTCAGTTGGTTCCA
LOC_Os08g24980
OsAffx.17848.3.S1_x_at--179--1231Chr08:15011988..15012012 (25 bp)
AGTTGGTTCCACTGCATTGTCGCGA
LOC_Os08g24980
Target Sequence 
TTCCACCAGATGTGCACACGCAAAAGAGGCATTGCATGCAAAAGAGGCAAGCTGACAACAGGTATCGTCGATCTATGCAC
TCAAGGATGACCCCATGGATAGAGGCGTGGTCACAGGCCTTGAATGATGTCGTCCAGGAGACCAGGCCATACGACCACAA
CACTTACGAACAATACATGGCCTGGTACTCATCGCAGACTCGCATCCGGCTGCTTGCACCCGAGGATCCCGACGAGCAAG
GTCCACCAACAATTGACCAAATATATGATATGCATCTAGCACCCCCCGCTCACTTGACGACCGACATTGTAGGGGAGTTA
GTAAGGGGTGCGAAAACATTGTGGGAGAAGCTTAGAGATGGAATCGCGGGTACCAACCAGGAAGTTATGGCCGCGGTTGA
CTCCCTCCGTAGAAAAGGGAACGCTTATGGTCCGTCCCATGCCTCATATGCCTCCTGCAAGGCCACAAATGATTCCTCAA
ATGGCTCCCGATGTGCCAACCTCACACTAGCAAGGAGGATTTGCACCATTTGCAGGGCCTACTCAGTTGGTTCCACTGCA
TTGTCGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17848.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis