Browse Element(s) Details


Os.24244.1.A1_at

Description gb:AK072420.1
DB_XREF= gi:32982443
TID=Os.24244.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.24244 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023083E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023083E12, full insert sequence.
FL= gb:AK072420.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2494611/11hydroxyproline-rich glycoprotein family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g24930Os.24332.1.A1_at11/118+14972212..14976481expressed protein
LOC_Os08g24930OsAffx.27733.1.S1_at1/118+14972212..14976481expressed protein
LOC_Os08g24940OsAffx.5916.1.S1_at11/118+14978578..14979207hypothetical protein
LOC_Os08g24940OsAffx.2843.1.S1_at1/118+14978578..14979207hypothetical protein
LOC_Os08g24946Os.24244.1.A1_at11/118+14982163..14987965hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os08g24952OsAffx.29338.1.S1_x_at11/118+14989267..14997650expressed protein
LOC_Os08g24952Os.7275.1.S1_a_at11/118+14989267..14997650expressed protein
LOC_Os08g24960OsAffx.17848.5.S1_x_at2/118+15000819..15001310hypothetical protein
LOC_Os08g24960OsAffx.17848.2.S1_x_at2/118+15000819..15001310hypothetical protein
LOC_Os08g24960OsAffx.17848.1.S1_x_at1/118+15000819..15001310hypothetical protein
LOC_Os08g24970Os.45977.1.S1_at1/118+15005209..15008771retrotransposon protein, putative, unclassified
LOC_Os08g24980OsAffx.17848.3.S1_at10/118+15011958..15018047Zinc knuckle family protein
LOC_Os08g24980OsAffx.17848.3.S1_x_at10/118+15011958..15018047Zinc knuckle family protein
LOC_Os08g24980Os.54363.1.S1_at6/118+15011958..15018047Zinc knuckle family protein
LOC_Os08g24980OsAffx.17848.4.S1_x_at4/118+15011958..15018047Zinc knuckle family protein
LOC_Os08g24980OsAffx.17848.5.S1_x_at2/118+15011958..15018047Zinc knuckle family protein
LOC_Os08g24980OsAffx.17848.4.S1_at2/118+15011958..15018047Zinc knuckle family protein
LOC_Os08g24980OsAffx.17848.1.S1_x_at2/118+15011958..15018047Zinc knuckle family protein
LOC_Os08g24980OsAffx.17848.1.S1_at2/118+15011958..15018047Zinc knuckle family protein
LOC_Os08g24980OsAffx.17848.2.S1_x_at1/118+15011958..15018047Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24244.1.A1_at--550--2491Chr08:14987666..14987690 (25 bp)
AACAGACTATAACAGCGAGGGCAAC
LOC_Os08g24946
Os.24244.1.A1_at--1153--2471Chr08:14987676..14987700 (25 bp)
AACAGCGAGGGCAACAGAATATTTT
LOC_Os08g24946
Os.24244.1.A1_at--284--10571Chr08:14987700..14987724 (25 bp)
TTCTTCTCCTCAAGGCAAATATGTT
LOC_Os08g24946
Os.24244.1.A1_at--1090--1091Chr08:14987725..14987749 (25 bp)
AGTGGTTGGTGATGGATGCTATTTC
LOC_Os08g24946
Os.24244.1.A1_at--255--7991Chr08:14987738..14987762 (25 bp)
GGATGCTATTTCGTTTAGAGTATAA
LOC_Os08g24946
Os.24244.1.A1_at--909--3031Chr08:14987784..14987808 (25 bp)
AATCCTTCTTTCCTTCTATGTCTAC
LOC_Os08g24946
Os.24244.1.A1_at--848--10671Chr08:14987793..14987817 (25 bp)
TTCCTTCTATGTCTACCTTCTACAT
LOC_Os08g24946
Os.24244.1.A1_at--1135--2411Chr08:14987836..14987860 (25 bp)
AAAACCCAGGCCAAGCAGGGCTGAT
LOC_Os08g24946
Os.24244.1.A1_at--61--4851Chr08:14987886..14987910 (25 bp)
GCTAAGTTTTGTCTACTTTCGCTAG
LOC_Os08g24946
Os.24244.1.A1_at--987--7151Chr08:14987896..14987920 (25 bp)
GTCTACTTTCGCTAGACAGCCTATC
LOC_Os08g24946
Os.24244.1.A1_at--565--2411Chr08:14987940..14987964 (25 bp)
AAAAAAGTGAAGTCACATTCTCCAT
LOC_Os08g24946
Target Sequence 
AACAGACTATAACAGCGAGGGCAACAGAATATTTTTCTTCTCCTCAAGGCAAATATGTTAGTGGTTGGTGATGGATGCTA
TTTCGTTTAGAGTATAATTGAACATAGNTCATCAAGCCAATCCTTCTTTCCTTCTATGTCTACCTTCTACATCNTACTAA
ATCNCTGAGCAAAACCCAGGCCAAGCAGGGCTGATGTAAAATAGGCATAAAGTTGGATTTGCTAAGTTTTGTCTACTTTC
GCTAGACAGCCTATCNTTTACGCATTCTCCATNAAAAAAAGTGAAGTCACATTCTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24244.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis