Browse Element(s) Details


OsAffx.27733.1.S1_at

Description tigr:9634.m01987
TID=OsAffx.27733.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g249301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g24910OsAffx.29337.1.S1_at11/118+14947652..14948200hypothetical protein
LOC_Os08g24920OsAffx.17138.1.S1_at11/118+14955723..14957080hypothetical protein
LOC_Os08g24930Os.24332.1.A1_at11/118+14972212..14976481expressed protein
LOC_Os08g24930OsAffx.27733.1.S1_at1/118+14972212..14976481expressed protein
LOC_Os08g24940OsAffx.5916.1.S1_at11/118+14978578..14979207hypothetical protein
LOC_Os08g24940OsAffx.2843.1.S1_at1/118+14978578..14979207hypothetical protein
LOC_Os08g24946Os.24244.1.A1_at11/118+14982163..14987965hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os08g24952OsAffx.29338.1.S1_x_at11/118+14989267..14997650expressed protein
LOC_Os08g24952Os.7275.1.S1_a_at11/118+14989267..14997650expressed protein
LOC_Os08g24960OsAffx.17848.5.S1_x_at2/118+15000819..15001310hypothetical protein
LOC_Os08g24960OsAffx.17848.2.S1_x_at2/118+15000819..15001310hypothetical protein
LOC_Os08g24960OsAffx.17848.1.S1_x_at1/118+15000819..15001310hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27733.1.S1_at--304--3131Chr08:14973934..14974030 (25 bp)
AATTTTCCTCTGCAGTTTTATGGAG
LOC_Os08g24930
OsAffx.27733.1.S1_at--111--1031Chr06:11724235..11724577 (25 bp)
AGGTGAATTATGTGCCAGGGAAAAC
NONE
OsAffx.27733.1.S1_at--658--2371Chr06:11723851..11723875 (25 bp)
AAACGTTGGCATCCGTTTCTGAGTT
NONE
OsAffx.27733.1.S1_at--451--10311Chr06:11723836..11723860 (25 bp)
TTTCTGAGTTTCTGACCGTGCCAAG
NONE
OsAffx.27733.1.S1_at--340--2671Chr06:11723814..11723838 (25 bp)
AAGCGCTCTTTCACATGGATTTGCC
NONE
OsAffx.27733.1.S1_at--1123--7931Chr06:11723798..11723822 (25 bp)
GGATTTGCCGGCTCGTTGAGTGCTC
NONE
OsAffx.27733.1.S1_at--530--10771Chr06:11723783..11723807 (25 bp)
TTGAGTGCTCTCTCTGCGACTGCCA
NONE
OsAffx.27733.1.S1_at--904--4591Chr06:11723768..11723792 (25 bp)
GCGACTGCCAGCCATATAGTTAGAA
NONE
OsAffx.27733.1.S1_at--1085--7491Chr06:11723740..11723764 (25 bp)
GTGGTCCATGGCAGTTGCAGGTTTT
NONE
OsAffx.27733.1.S1_at--669--10731Chr06:11723726..11723750 (25 bp)
TTGCAGGTTTTGTTGGTTGGTCCAC
NONE
OsAffx.27733.1.S1_at--377--8551Chr06:11723713..11723737 (25 bp)
TGGTTGGTCCACTGAAACTAGTACA
NONE
Target Sequence 
AATTTTCCTCTGCAGTTTTATGGAGGTGAATTATGTGCCAGGGAAAACGTTGGCATCCGTTTCTGAGTTTCTGACCGTGC
CAAGCGCTCTTTCACATGGATTTGCCGGCTCGTTGAGTGCTCTCTCTGCGACTGCCAGCCATATAGTTAGAAGTGGTGGT
CCATGGCAGTTGCAGGTTTTGTTGGTTGGTCCACTGAAACTAGTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27733.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis