Browse Element(s) Details


Os.24332.1.A1_at

Description gb:AK064536.1
DB_XREF= gi:32974554
TID=Os.24332.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24332 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-111-H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-H10, full insert sequence.
FL= gb:AK064536.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2493011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g24910OsAffx.29337.1.S1_at11/118+14947652..14948200hypothetical protein
LOC_Os08g24920OsAffx.17138.1.S1_at11/118+14955723..14957080hypothetical protein
LOC_Os08g24930Os.24332.1.A1_at11/118+14972212..14976481expressed protein
LOC_Os08g24930OsAffx.27733.1.S1_at1/118+14972212..14976481expressed protein
LOC_Os08g24940OsAffx.5916.1.S1_at11/118+14978578..14979207hypothetical protein
LOC_Os08g24940OsAffx.2843.1.S1_at1/118+14978578..14979207hypothetical protein
LOC_Os08g24946Os.24244.1.A1_at11/118+14982163..14987965hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os08g24952OsAffx.29338.1.S1_x_at11/118+14989267..14997650expressed protein
LOC_Os08g24952Os.7275.1.S1_a_at11/118+14989267..14997650expressed protein
LOC_Os08g24960OsAffx.17848.5.S1_x_at2/118+15000819..15001310hypothetical protein
LOC_Os08g24960OsAffx.17848.2.S1_x_at2/118+15000819..15001310hypothetical protein
LOC_Os08g24960OsAffx.17848.1.S1_x_at1/118+15000819..15001310hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24332.1.A1_at--119--10111Chr08:14975909..14975933 (25 bp)
TATGGATCCCAGTCAGGGTGCGGCT
LOC_Os08g24930
Os.24332.1.A1_at--412--5291Chr08:14975940..14975964 (25 bp)
GAATGGACACTCTTCCTGTTGATAG
LOC_Os08g24930
Os.24332.1.A1_at--551--7331Chr08:14975991..14976015 (25 bp)
GTGCATATCGACCTCAGACAAATTT
LOC_Os08g24930
Os.24332.1.A1_at--575--1251Chr08:14976076..14976100 (25 bp)
AGATTACCGCCGTCGAGACAGTTTC
LOC_Os08g24930
Os.24332.1.A1_at--691--3431Chr08:14976138..14976162 (25 bp)
CAGATAGGTATGTCCCTGACCTTGA
LOC_Os08g24930
Os.24332.1.A1_at--160--1271Chr08:14976177..14976201 (25 bp)
AGATACCAGGTCAGGCTAGCCTACA
LOC_Os08g24930
Os.24332.1.A1_at--671--5231Chr08:14976238..14976262 (25 bp)
GAATATGCATGTGCCCTACTAGTAG
LOC_Os08g24930
Os.24332.1.A1_at--125--10031Chr08:14976260..14976284 (25 bp)
TAGAAGGTTGTTGGCCCTCTTGACC
LOC_Os08g24930
Os.24332.1.A1_at--1029--9571Chr08:14976277..14976301 (25 bp)
TCTTGACCCCTTTAATCTCTTGTAG
LOC_Os08g24930
Os.24332.1.A1_at--720--3051Chr08:14976290..14976314 (25 bp)
AATCTCTTGTAGTCAGCCAACGGAA
LOC_Os08g24930
Os.24332.1.A1_at--1028--10451Chr08:14976439..14976463 (25 bp)
TTAGCCCTACTTTTCATACTTTACT
LOC_Os08g24930
Target Sequence 
TATGGATCCCAGTCAGGGTGCGGCTACCATGGAATGGACACTCTTCCTGTTGATAGATATTATCCTCAGGAGCACCACAA
TGGTGCATATCGACCTCAGACAAATTTTGGTGAGGAGGAACAGGCGGCGGCTTATGGTAGGCGTAGGAATGATCATGGAT
GGGGACCAGATTACCGCCGTCGAGACAGTTTCGACTGGGAACACAGGAGTTCAGCTAGAGGGACAGTTACAGATAGGTAT
GTCCCTGACCTTGAACAGACTAACCATCAGATACCAGGTCAGGCTAGCCTACAAGATGGCTACTTCATGCGTAGAAGCAG
GTCTTTTGTGAATATGCATGTGCCCTACTAGTAGAAGGTTGTTGGCCCTCTTGACCCCTTTAATCTCTTGTAGTCAGCCA
ACGGAAAGCCTNAAGGAACCAAAGTTGAACCCTAGTCCGGGTAGTTAACTGATGTATGTTAATGCATAGCGATCAAGAGC
ATCTCAGTGACTGAACTGCAGTCCCATTTTGTNCATTCTTAACTACCAATTTAGCCCTACTTTTCATACTTTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24332.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis