Browse Element(s) Details


OsAffx.17138.1.S1_at

Description tigr:9636.m02441
TID=OsAffx.17138.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2492011/11hypothetical protein
LOC_Os04g126694/11hypothetical protein
LOC_Os04g241201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g24880OsAffx.29336.1.S1_at11/118+14926267..14931795hydroxyproline-rich glycoprotein family protein, putative
LOC_Os08g24890OsAffx.5915.1.S1_at11/118+14933949..14936121hypothetical protein
LOC_Os08g24900OsAffx.17137.1.S1_at10/118+14938060..14939635hypothetical protein
LOC_Os08g24900OsAffx.10482.1.S1_x_at1/118+14938060..14939635hypothetical protein
LOC_Os08g24900OsAffx.12972.1.S1_at1/118+14938060..14939635hypothetical protein
LOC_Os08g24910OsAffx.29337.1.S1_at11/118+14947652..14948200hypothetical protein
LOC_Os08g24920OsAffx.17138.1.S1_at11/118+14955723..14957080hypothetical protein
LOC_Os08g24930Os.24332.1.A1_at11/118+14972212..14976481expressed protein
LOC_Os08g24930OsAffx.27733.1.S1_at1/118+14972212..14976481expressed protein
LOC_Os08g24940OsAffx.5916.1.S1_at11/118+14978578..14979207hypothetical protein
LOC_Os08g24940OsAffx.2843.1.S1_at1/118+14978578..14979207hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17138.1.S1_at--361--2692Chr08:14955759..14955783 (25 bp)
AAGCTGCAGCACGCGCCCAAGGTGT
LOC_Os08g24920
OsAffx.17138.1.S1_at--500--631Chr08:14955792..14955816 (25 bp)
ATGTATTCGTGGAAAAAGGCGGAGA
LOC_Os08g24920
OsAffx.17138.1.S1_at--439--6171Chr08:14956969..14956990 (22 bp)
GAGGATGTGCATCTTTGATTTGATT
LOC_Os08g24920
OsAffx.17138.1.S1_at--551--8833Chr08:14956986..14957010 (25 bp)
TGATTTTTTCCATTGTGTCGATTTA
LOC_Os08g24920
OsAffx.17138.1.S1_at--1085--6533Chr08:14956987..14957011 (25 bp)
GATTTTTTCCATTGTGTCGATTTAT
LOC_Os08g24920
OsAffx.17138.1.S1_at--259--3613Chr08:14956996..14957020 (25 bp)
CATTGTGTCGATTTATGGTTCAGCA
LOC_Os08g24920
OsAffx.17138.1.S1_at--664--7451Chr08:14957000..14957024 (25 bp)
GTGTCGATTTATGGTTCAGCAAGCA
LOC_Os08g24920
OsAffx.17138.1.S1_at--285--7191Chr08:14957002..14957026 (25 bp)
GTCGATTTATGGTTCAGCAAGCAAT
LOC_Os08g24920
OsAffx.17138.1.S1_at--65--6531Chr08:14957005..14957029 (25 bp)
GATTTATGGTTCAGCAAGCAATAAC
LOC_Os08g24920
OsAffx.17138.1.S1_at--959--10431Chr08:14957008..14957032 (25 bp)
TTATGGTTCAGCAAGCAATAACAAC
LOC_Os08g24920
OsAffx.17138.1.S1_at--150--5195Chr08:14957022..14957046 (25 bp)
GCAATAACAACCATAACATCCAGCA
LOC_Os08g24920
Target Sequence 
AAGCTGCAGCACGCGCCCAAGGTGTTCGACGAAATGTATTCGTGGAAAAAGGCGGAGAGAAGGATGGCGGGGAGGATGTG
CATCTTTGATTTGATTTTTTCCATTGTGTCGATTTATGGTTCAGCAAGCAATAACAACCATAACATCCAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17138.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis