Browse Element(s) Details


OsAffx.29338.1.S1_x_at

Description tigr:9636.m02444
TID=OsAffx.29338.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2495211/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g24930Os.24332.1.A1_at11/118+14972212..14976481expressed protein
LOC_Os08g24930OsAffx.27733.1.S1_at1/118+14972212..14976481expressed protein
LOC_Os08g24940OsAffx.5916.1.S1_at11/118+14978578..14979207hypothetical protein
LOC_Os08g24940OsAffx.2843.1.S1_at1/118+14978578..14979207hypothetical protein
LOC_Os08g24946Os.24244.1.A1_at11/118+14982163..14987965hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os08g24952OsAffx.29338.1.S1_x_at11/118+14989267..14997650expressed protein
LOC_Os08g24952Os.7275.1.S1_a_at11/118+14989267..14997650expressed protein
LOC_Os08g24960OsAffx.17848.5.S1_x_at2/118+15000819..15001310hypothetical protein
LOC_Os08g24960OsAffx.17848.2.S1_x_at2/118+15000819..15001310hypothetical protein
LOC_Os08g24960OsAffx.17848.1.S1_x_at1/118+15000819..15001310hypothetical protein
LOC_Os08g24970Os.45977.1.S1_at1/118+15005209..15008771retrotransposon protein, putative, unclassified
LOC_Os08g24980OsAffx.17848.3.S1_at10/118+15011958..15018047Zinc knuckle family protein
LOC_Os08g24980OsAffx.17848.3.S1_x_at10/118+15011958..15018047Zinc knuckle family protein
LOC_Os08g24980Os.54363.1.S1_at6/118+15011958..15018047Zinc knuckle family protein
LOC_Os08g24980OsAffx.17848.4.S1_x_at4/118+15011958..15018047Zinc knuckle family protein
LOC_Os08g24980OsAffx.17848.5.S1_x_at2/118+15011958..15018047Zinc knuckle family protein
LOC_Os08g24980OsAffx.17848.4.S1_at2/118+15011958..15018047Zinc knuckle family protein
LOC_Os08g24980OsAffx.17848.1.S1_x_at2/118+15011958..15018047Zinc knuckle family protein
LOC_Os08g24980OsAffx.17848.1.S1_at2/118+15011958..15018047Zinc knuckle family protein
LOC_Os08g24980OsAffx.17848.2.S1_x_at1/118+15011958..15018047Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29338.1.S1_x_at--655--8171Chr08:14996824..14996848 (25 bp)
GGAACCGGTGGCAGCTTTTACAGGA
LOC_Os08g24952
OsAffx.29338.1.S1_x_at--209--6311Chr08:14996959..14996983 (25 bp)
GATGAGGTTCCCCAAACAGCAATTA
LOC_Os08g24952
OsAffx.29338.1.S1_x_at--211--2151Chr08:14996974..14996998 (25 bp)
ACAGCAATTAACACACCTTCCATGG
LOC_Os08g24952
OsAffx.29338.1.S1_x_at--929--5431Chr08:14997063..14997087 (25 bp)
GAACCCACCTGCCAATGATATTCGG
LOC_Os08g24952
OsAffx.29338.1.S1_x_at--1093--2831Chr08:14997138..14997162 (25 bp)
AAGTAGATACTCTTCTGGGTCTCCA
LOC_Os08g24952
OsAffx.29338.1.S1_x_at--32--3911Chr08:14997152..14997176 (25 bp)
CTGGGTCTCCAGATGCTAGATTTGA
LOC_Os08g24952
OsAffx.29338.1.S1_x_at--20--5151Chr08:14997180..14997204 (25 bp)
GCAACCTTCTTTCACTTCATATGGA
LOC_Os08g24952
OsAffx.29338.1.S1_x_at--903--811Chr08:14997200..14997224 (25 bp)
ATGGAATGCCTTCTTTGGGTTCGAC
LOC_Os08g24952
OsAffx.29338.1.S1_x_at--146--7871Chr08:14997245..14997269 (25 bp)
GGTATAGTCCCTCCATTGATGAAAC
LOC_Os08g24952
OsAffx.29338.1.S1_x_at--683--2231Chr08:14997299..14997323 (25 bp)
ACAATGCTTCTGACTTTCGGAGGGA
LOC_Os08g24952
OsAffx.29338.1.S1_x_at--1109--5211Chr08:14997342..14997366 (25 bp)
GAATTTTGCTCTCCATAACCAGTAT
LOC_Os08g24952
Target Sequence 
GGAACCGGTGGCAGCTTTTACAGGAGGCAGAACCTCGAGGATTACACCATGGACAGTAGTGAGTCTGCTCAGATGAATCC
AGTTCCTGGTAGAGATGTGCAGGAATATGCAAGAACATACTATGGACACAACAGGGATGAGGTTCCCCAAACAGCAATTA
ACACACCTTCCATGGATATTCGAACACACATAAGAATGTACGGCAGGCACATCAGGGATGATCATACCCAAACAACCATG
AACCCACCTGCCAATGATATTCGGGCACAGATAAGAATGTATGGTCAACACGCTACCTCCGATCACCAGCATGCAAGTAG
ATACTCTTCTGGGTCTCCAGATGCTAGATTTGAGCAGCAACCTTCTTTCACTTCATATGGAATGCCTTCTTTGGGTTCGA
CAGGGAGGTCGATGATGGATAGGTATAGTCCCTCCATTGATGAAACAAGCTATAGGACTGGCCAAAGAGGCCCATACAAT
GCTTCTGACTTTCGGAGGGATCGGCATCCTGATGACATGAATTTTGCTCTCCATAACCAGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29338.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis