Browse Element(s) Details


Os.9649.1.S1_at

Description gb:AK100576.1
DB_XREF= gi:32985785
TID=Os.9649.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9649 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023105H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023105H06, full insert sequence.
FL= gb:AK100576.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g250107/11TBC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g24970Os.45977.1.S1_at1/118+15005209..15008771retrotransposon protein, putative, unclassified
LOC_Os08g24980OsAffx.17848.3.S1_at10/118+15011958..15018047Zinc knuckle family protein
LOC_Os08g24980OsAffx.17848.3.S1_x_at10/118+15011958..15018047Zinc knuckle family protein
LOC_Os08g24980Os.54363.1.S1_at6/118+15011958..15018047Zinc knuckle family protein
LOC_Os08g24980OsAffx.17848.4.S1_x_at4/118+15011958..15018047Zinc knuckle family protein
LOC_Os08g24980OsAffx.17848.5.S1_x_at2/118+15011958..15018047Zinc knuckle family protein
LOC_Os08g24980OsAffx.17848.4.S1_at2/118+15011958..15018047Zinc knuckle family protein
LOC_Os08g24980OsAffx.17848.1.S1_x_at2/118+15011958..15018047Zinc knuckle family protein
LOC_Os08g24980OsAffx.17848.1.S1_at2/118+15011958..15018047Zinc knuckle family protein
LOC_Os08g24980OsAffx.17848.2.S1_x_at1/118+15011958..15018047Zinc knuckle family protein
LOC_Os08g24990NANA8+15023004..15029099retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g25000NANA8+15029410..15030030retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g25010Os.9649.1.S1_at7/118+15030438..15034156TBC domain containing protein, expressed
LOC_Os08g25010OsAffx.22944.1.S1_at1/118+15030438..15034156TBC domain containing protein, expressed
LOC_Os08g25020NANA8+15056421..15058320retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9649.1.S1_at--919--1971Chr08:15030958..15030982 (25 bp)
ACTGCAATGTGGGTTTCTCATGAAC
LOC_Os08g25010
Os.9649.1.S1_at--475--7471Chr08:15030911..15030935 (25 bp)
GTGTGCATCACATCTTCATATTTGA
LOC_Os08g25010
Os.9649.1.S1_at--1008--5951Chr08:15030884..15030908 (25 bp)
GAGAATTCCATGATGCCATATGAGC
LOC_Os08g25010
Os.9649.1.S1_at--1009--5031Chr08:15030861..15030885 (25 bp)
GCAGATTGTGCTAATGGTGGAAACT
LOC_Os08g25010
Os.9649.1.S1_at--101--3472Chr08:15030832..15030856 (25 bp)
CAGGTTTGGTGTTTGTTGAAATTCA
LOC_Os08g25010
Os.9649.1.S1_at--535--10851Chr08:15030780..15030805 (25 bp)
TTGGAGAGCGCTTTTGCAGTTTTGC
LOC_Os08g25010
Os.9649.1.S1_at--963--5511NONE
GAAAATGTATTACATCGCCGCCGGC
NONE
Os.9649.1.S1_at--1091--4471NONE
GCCGGCCTCTGCCATAAAAGGACAC
NONE
Os.9649.1.S1_at--265--4391Chr08:15030688..15030712 (25 bp)
GCCAACAAGTTGTTTAACTACTCCA
LOC_Os08g25010
Os.9649.1.S1_at--425--10391NONE
TTTTGTGACAAATCCTTTAGGCTAA
NONE
Os.9649.1.S1_at--294--9991Chr08:15030433..15030457 (25 bp)
TAGCCAACGGTACTCTCTCTAAGAA
NONE
Target Sequence 
ACTGCAATGTGGGTTTCTCATGAACAAGTCATATTGTGTGTTTTTGTGTGTGCATCACATCTTCATATTTGAAAGAGAAT
TCCATGATGCCATATGAGCAGATTGTGCTAATGGTGGAAACTTGTACAGGTTTGGTGTTTGTTGAAATTCATTNGGCAAC
CCAGCNANGGATATATTTTTGGAGAGCGCTTTTGCAGTTTTGCTTTACTTTTTTTAAGATAATGAAAATGTATTACATCG
CCGCCGGCCTCTGCCATAAAAGGACACATAGCCAACAAGTTGTTTAACTACTCCATCCGTCCCAGAATATAAGAAGTTTT
AAAGTTGGACACGGTTATTAAAAAAATTGGTAGAAGTAAATGGTAGAGGGTTGTGATTAGATGAGTAGTGGAGGTAGGTA
GAAAAAGTGAATGGTGGAGAGTTGTGATTGGTTGGGAAGAAAATGTTGATCGAGAAGTTGTTATATTTTGTGACAAATCC
TTTAGGCTAATAATTGTTGTATTTTGGGACGGAGGGAGTAAATAATAGCCAACGGTACTCTCTCTAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9649.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis