Browse Element(s) Details


OsAffx.22944.1.S1_at

Description gb:NM_184482.1
DB_XREF= gi:34896053
TID=OsAffx.22944.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g067506/11Leucine Rich Repeat family protein
LOC_Os08g250101/11TBC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06720OsAffx.23138.1.S1_at10/111+3173346..3176404Leucine Rich Repeat family protein
LOC_Os01g06730Os.24977.1.A1_at7/111+3178941..3182009Leucine Rich Repeat family protein
LOC_Os01g06740Os.11371.1.S1_at11/111+3185839..3187132Ribosome inactivating protein, expressed
LOC_Os01g06740Os.1665.2.S1_x_at1/111+3185839..3187132Ribosome inactivating protein, expressed
LOC_Os01g06750OsAffx.22944.3.S1_at11/111+3193788..3196812Leucine Rich Repeat family protein
LOC_Os01g06750OsAffx.22944.1.S1_at6/111+3193788..3196812Leucine Rich Repeat family protein
LOC_Os01g06760OsAffx.23139.1.S1_at11/111+3198025..3201054Leucine Rich Repeat family protein
LOC_Os01g06770OsAffx.22848.4.S1_at2/111+3205943..3211901retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g06770OsAffx.22848.4.S1_x_at1/111+3205943..3211901retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g06770OsAffx.22848.3.S1_x_at1/111+3205943..3211901retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g06780Os.29987.1.S1_at5/111+3214518..3215081retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g06780Os.38172.1.S1_x_at4/111+3214518..3215081retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g06780Os.43567.1.S1_x_at3/111+3214518..3215081retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g06790OsAffx.1949.1.S1_at11/111+3219105..3223059Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22944.1.S1_at--28--5491Chr01:3195629..3195653 (25 bp)
GAACTTGCCTCATTCCAGATACTAA
LOC_Os01g06750
OsAffx.22944.1.S1_at--691--6471Chr01:3195646..3195670 (25 bp)
GATACTAAGAAACCTATCTGACTTA
LOC_Os01g06750
OsAffx.22944.1.S1_at--603--3071Chr01:3195710..3195734 (25 bp)
AATAATTCTTCTCAGGTATCCTACC
LOC_Os01g06750
OsAffx.22944.1.S1_at--258--9531Chr01:3195719..3195743 (25 bp)
TCTCAGGTATCCTACCCAGATATTG
LOC_Os01g06750
OsAffx.22944.1.S1_at--378--10211Chr01:3195739..3195763 (25 bp)
TATTGATTACTTGAGCTTGGCGTCC
LOC_Os01g06750
OsAffx.22944.1.S1_at--962--5911Chr01:3195751..3195775 (25 bp)
GAGCTTGGCGTCCTGTAACATAACT
LOC_Os01g06750
OsAffx.22944.1.S1_at--969--831NONE
ATGGACTTTGGGACCAATTCCATCT
NONE
OsAffx.22944.1.S1_at--658--8452Chr01:3201109..3201132 (24 bp)
TGGCCATGTCATTGTTGCCACAATC
NONE
OsAffx.22944.1.S1_at--743--10793Chr01:3201119..3201143 (25 bp)
TTGTTGCCACAATCTACTACGTATT
NONE
OsAffx.22944.1.S1_at--40--6891Chr01:3196898..3196922 (25 bp)
GTATTTGAATTCTTCCATCTGGATC
NONE
OsAffx.22944.1.S1_at--666--6052Chr01:3201185..3201209 (25 bp)
GAGTTACATTACATACTACTAGTAG
NONE
Target Sequence 
GAACTTGCCTCATTCCAGATACTAAGAAACCTATCTGACTTAAACCTCTCATACAACAAATTAAGTGTAATAGACGGTGA
AAATAATTCTTCTCAGGTATCCTACCCAGATATTGATTACTTGAGCTTGGCGTCCTGTAACATAACTAGATTTCCGAACA
TTTTGAGGCATATAGATTATGAGATTAATGGCATTGATCTTTCACATAACCAAATCCAAGGGGCCATACCCCTTTGGGCA
TGGGAGAAATGGACTTTGGGACCAATTCCATCTCAACTCGGCCGTCTAAAGCAGATGGAGGCTTTGGACCTATCTTCAAA
TGAGCTTTCAGGCTGCAGCAACATGACATTGCCGAATGTGATACCTTCCGAGAAGAAATCTGTAGATGTTATGCTGTTCC
TCTTTTCTGGAATAGGATTTGGCCTTGGATTTGCCATTGCAATTGGCCATGTCATTGTTGCCACAATCTACTACGTATTT
GAATTCTTCCATCTGGATCAAATCAACTATATCGTATACAGAGTTACATTACATACTACTAGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22944.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis