Browse Element(s) Details


OsAffx.1949.1.S1_at

Description tigr:9629.m00608
TID=OsAffx.1949.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0679011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06750OsAffx.22944.3.S1_at11/111+3193788..3196812Leucine Rich Repeat family protein
LOC_Os01g06750OsAffx.22944.1.S1_at6/111+3193788..3196812Leucine Rich Repeat family protein
LOC_Os01g06760OsAffx.23139.1.S1_at11/111+3198025..3201054Leucine Rich Repeat family protein
LOC_Os01g06770OsAffx.22848.4.S1_at2/111+3205943..3211901retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g06770OsAffx.22848.4.S1_x_at1/111+3205943..3211901retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g06770OsAffx.22848.3.S1_x_at1/111+3205943..3211901retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g06780Os.29987.1.S1_at5/111+3214518..3215081retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g06780Os.38172.1.S1_x_at4/111+3214518..3215081retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g06780Os.43567.1.S1_x_at3/111+3214518..3215081retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g06790OsAffx.1949.1.S1_at11/111+3219105..3223059Leucine Rich Repeat family protein, expressed
LOC_Os01g06800OsAffx.23140.2.A1_at11/111+3225886..3226584hypothetical protein
LOC_Os01g06810NANA1+3227687..3232070retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g06820NANA1+3232789..3234601Leucine Rich Repeat family protein
LOC_Os01g06836Os.12941.1.S1_at1/111+3237929..3240117Leucine Rich Repeat family protein
LOC_Os01g06852OsAffx.10943.1.S1_x_at10/111+3243801..3246770transposon protein, putative, unclassified
LOC_Os01g06852OsAffx.10943.2.S1_at9/111+3243801..3246770transposon protein, putative, unclassified
LOC_Os01g06852OsAffx.10943.1.S1_at5/111+3243801..3246770transposon protein, putative, unclassified
LOC_Os01g06870NANA1+3248006..3249526Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1949.1.S1_at--776--3171Chr01:3222003..3222027 (25 bp)
AATTGGTTCAGCTCGAGTCCTTGGA
LOC_Os01g06790
OsAffx.1949.1.S1_at--805--10851Chr01:3222023..3222047 (25 bp)
TTGGACCTCTCTTTGAATCAGCTCT
LOC_Os01g06790
OsAffx.1949.1.S1_at--559--2111Chr01:3222061..3222085 (25 bp)
ACAGGAGTTGGCATCCCTAACATCT
LOC_Os01g06790
OsAffx.1949.1.S1_at--1037--9311Chr01:3222074..3222098 (25 bp)
TCCCTAACATCTCTCGCAATATTGA
LOC_Os01g06790
OsAffx.1949.1.S1_at--268--5651Chr01:3222123..3222147 (25 bp)
GACAGATACCACAAGGGCCACAGTT
LOC_Os01g06790
OsAffx.1949.1.S1_at--694--3311Chr01:3222141..3222165 (25 bp)
CACAGTTCTTGTCATTCGGCAACAG
LOC_Os01g06790
OsAffx.1949.1.S1_at--296--651Chr01:3222180..3222204 (25 bp)
ATGCAGGACTCTGTGGAAGGCCGCT
LOC_Os01g06790
OsAffx.1949.1.S1_at--749--5291Chr01:3222195..3222219 (25 bp)
GAAGGCCGCTGTCCAAACAGTGCAA
LOC_Os01g06790
OsAffx.1949.1.S1_at--404--5411Chr01:3222233..3222257 (25 bp)
GAAGCTGCAAGATCACCATCATCCT
LOC_Os01g06790
OsAffx.1949.1.S1_at--956--7971Chr01:3222872..3222896 (25 bp)
GGATGATCACTGAGACTTGCCCTGA
LOC_Os01g06790
OsAffx.1949.1.S1_at--94--9511Chr01:3222939..3222963 (25 bp)
TCTCCGGCGAGTTGCAAGTGGCAGT
LOC_Os01g06790
Target Sequence 
AATTGGTTCAGCTCGAGTCCTTGGACCTCTCTTTGAATCAGCTCTCAGAAGCAATCCCACAGGAGTTGGCATCCCTAACA
TCTCTCGCAATATTGAATCTCTCATACAACAATTTGACTGGACAGATACCACAAGGGCCACAGTTCTTGTCATTCGGCAA
CAGATCATTCGAAGGCAATGCAGGACTCTGTGGAAGGCCGCTGTCCAAACAGTGCAACTATTCAGGCATAGAAGCTGCAA
GATCACCATCATCCTCTCGAGATAGCGCATCCCCTCGAACACGTACCAGGCAGAAGCAGCGCCGCACTGGCGAGCAGCGG
AGCAGCAGGATTAACTCGCTCCTGCAACGCATCCACGATGACCGGATGATCACTGAGACTTGCCCTGACCTCCAGGTCGC
CACCTTGCAGTTCCAACCTGTCGCGTTTTCTCTCCGGCGAGTTGCAAGTGGCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1949.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis