Browse Element(s) Details


OsAffx.23140.2.A1_at

Description tigr:9629.m00609
TID=OsAffx.23140.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0680011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06760OsAffx.23139.1.S1_at11/111+3198025..3201054Leucine Rich Repeat family protein
LOC_Os01g06770OsAffx.22848.4.S1_at2/111+3205943..3211901retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g06770OsAffx.22848.4.S1_x_at1/111+3205943..3211901retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g06770OsAffx.22848.3.S1_x_at1/111+3205943..3211901retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g06780Os.29987.1.S1_at5/111+3214518..3215081retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g06780Os.38172.1.S1_x_at4/111+3214518..3215081retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g06780Os.43567.1.S1_x_at3/111+3214518..3215081retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g06790OsAffx.1949.1.S1_at11/111+3219105..3223059Leucine Rich Repeat family protein, expressed
LOC_Os01g06800OsAffx.23140.2.A1_at11/111+3225886..3226584hypothetical protein
LOC_Os01g06810NANA1+3227687..3232070retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g06820NANA1+3232789..3234601Leucine Rich Repeat family protein
LOC_Os01g06836Os.12941.1.S1_at1/111+3237929..3240117Leucine Rich Repeat family protein
LOC_Os01g06852OsAffx.10943.1.S1_x_at10/111+3243801..3246770transposon protein, putative, unclassified
LOC_Os01g06852OsAffx.10943.2.S1_at9/111+3243801..3246770transposon protein, putative, unclassified
LOC_Os01g06852OsAffx.10943.1.S1_at5/111+3243801..3246770transposon protein, putative, unclassified
LOC_Os01g06870NANA1+3248006..3249526Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23140.2.A1_at--410--2811Chr01:3226207..3226231 (25 bp)
AAGATCACTCTACATCGCTTATGCC
LOC_Os01g06800
OsAffx.23140.2.A1_at--793--2031Chr01:3226137..3226161 (25 bp)
ACTATATTTCCAACACTGACCAGAA
LOC_Os01g06800
OsAffx.23140.2.A1_at--842--7511Chr01:3226089..3226113 (25 bp)
GTGGATCATATTTGTGAGCTGCGCA
LOC_Os01g06800
OsAffx.23140.2.A1_at--1141--7371Chr01:3226076..3226100 (25 bp)
GTGAGCTGCGCAAACCCAGATGCTG
LOC_Os01g06800
OsAffx.23140.2.A1_at--888--3411Chr01:3226060..3226084 (25 bp)
CAGATGCTGGGAGAGCGGTTCCCAA
LOC_Os01g06800
OsAffx.23140.2.A1_at--236--5891Chr01:3226048..3226072 (25 bp)
GAGCGGTTCCCAAAAAATCATTGTA
LOC_Os01g06800
OsAffx.23140.2.A1_at--992--7031Chr01:3226026..3226050 (25 bp)
GTAAGCAAGGCTAAGGTTTCTAAGA
LOC_Os01g06800
OsAffx.23140.2.A1_at--712--6391Chr01:3225979..3226003 (25 bp)
GATCGAGACGATGGCTTATCAAGTT
LOC_Os01g06800
OsAffx.23140.2.A1_at--77--372Chr01:3248253..3248277 (25 bp)
ATCAAGTTCAACTCACTGAGGTCAA
NONE
OsAffx.23140.2.A1_at--1157--7032Chr01:3248233..3248257 (25 bp)
GTCAAGGGAAATGACCCTGCCGGAG
NONE
OsAffx.23140.2.A1_at--1052--9171Chr01:3225925..3225949 (25 bp)
TGCCGGAGGCCATGTCACAGGTGAC
LOC_Os01g06800
Target Sequence 
AAGATCACTCTACATCGCTTATGCCATGATTATTGCTTTAACATTTTGGATTAAAATATACCGATTCATGACTATATTTC
CAACACTGACCAGAAAAGCTGCTATAAGAGAAATTGAGGTGGATCATATTTGTGAGCTGCGCAAACCCAGATGCTGGGAG
AGCGGTTCCCAAAAAATCATTGTAAGCAAGGCTAAGGTTTCTAAGAGAGGTGAGGTTAAAGAGTGCAGGATCGAGACGAT
GGCTTATCAAGTTCAACTCACTGAGGTCAAGGGAAATGACCCTGCCGGAGGCCATGTCACAGGTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23140.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis