Browse Element(s) Details


OsAffx.23139.1.S1_at

Description tigr:9629.m00605
TID=OsAffx.23139.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0676011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06720OsAffx.23138.1.S1_at10/111+3173346..3176404Leucine Rich Repeat family protein
LOC_Os01g06730Os.24977.1.A1_at7/111+3178941..3182009Leucine Rich Repeat family protein
LOC_Os01g06740Os.11371.1.S1_at11/111+3185839..3187132Ribosome inactivating protein, expressed
LOC_Os01g06740Os.1665.2.S1_x_at1/111+3185839..3187132Ribosome inactivating protein, expressed
LOC_Os01g06750OsAffx.22944.3.S1_at11/111+3193788..3196812Leucine Rich Repeat family protein
LOC_Os01g06750OsAffx.22944.1.S1_at6/111+3193788..3196812Leucine Rich Repeat family protein
LOC_Os01g06760OsAffx.23139.1.S1_at11/111+3198025..3201054Leucine Rich Repeat family protein
LOC_Os01g06770OsAffx.22848.4.S1_at2/111+3205943..3211901retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g06770OsAffx.22848.4.S1_x_at1/111+3205943..3211901retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g06770OsAffx.22848.3.S1_x_at1/111+3205943..3211901retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g06780Os.29987.1.S1_at5/111+3214518..3215081retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g06780Os.38172.1.S1_x_at4/111+3214518..3215081retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g06780Os.43567.1.S1_x_at3/111+3214518..3215081retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g06790OsAffx.1949.1.S1_at11/111+3219105..3223059Leucine Rich Repeat family protein, expressed
LOC_Os01g06800OsAffx.23140.2.A1_at11/111+3225886..3226584hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23139.1.S1_at--473--7811Chr01:3198519..3198543 (25 bp)
GGTCTCTCTTGATATCTCATTTAGT
LOC_Os01g06760
OsAffx.23139.1.S1_at--132--1231Chr01:3198541..3198565 (25 bp)
AGTTCTGACCTTATTGAGCTATTCG
LOC_Os01g06760
OsAffx.23139.1.S1_at--663--4871Chr01:3198558..3198582 (25 bp)
GCTATTCGACCACGGTTATCTCATT
LOC_Os01g06760
OsAffx.23139.1.S1_at--516--8111Chr01:3198597..3198621 (25 bp)
GGACTTACCAAACTTGACAGCCTTA
LOC_Os01g06760
OsAffx.23139.1.S1_at--1017--3051Chr01:3198628..3198802 (25 bp)
AATCTTAGCAGCTTACGCTCACTAA
LOC_Os01g06760
OsAffx.23139.1.S1_at--1061--7771Chr01:3198835..3198859 (25 bp)
GGTCCAATTCCAGAGTACTTTGCCA
LOC_Os01g06760
OsAffx.23139.1.S1_at--19--7711Chr01:3198911..3198935 (25 bp)
GGGTCTCGCCTTCAATATTTCAGAA
LOC_Os01g06760
OsAffx.23139.1.S1_at--960--2271Chr01:3198966..3198990 (25 bp)
AAATCCTGACTTATCTGGTACTCTG
LOC_Os01g06760
OsAffx.23139.1.S1_at--370--7011Chr01:3198983..3199007 (25 bp)
GTACTCTGCCGAATATCTCTGCTGA
LOC_Os01g06760
OsAffx.23139.1.S1_at--70--5991Chr01:3199018..3199042 (25 bp)
GAGAGTTTACTTGTTGGTCGGACCA
LOC_Os01g06760
OsAffx.23139.1.S1_at--223--71Chr01:3199167..3199191 (25 bp)
ATTGCAAGTCTCTGGGTTGGAACTA
LOC_Os01g06760
Target Sequence 
GGTCTCTCTTGATATCTCATTTAGTTCTGACCTTATTGAGCTATTCGACCACGGTTATCTCATTAACCCATGGCAAATGG
ACTTACCAAACTTGACAGCCTTAGTTGCAAATCTTAGCAGCTTACGCTCACTAAATGTGATTGACCTACAATATAATTAT
TTGACTGGTCCAATTCCAGAGTACTTTGCCAACTTATCCTCCTTGAGCGTTCTCCAACTGGGTTATAACAAGCTTGAAGG
ATGGGTCTCGCCTTCAATATTTCAGAACAAGAAACTAGTGACTATTGATCTTCATAGAAATCCTGACTTATCTGGTACTC
TGCCGAATATCTCTGCTGACAGTAGTTTGGAGAGTTTACTTGTTGGTCGGACCAACTTCTCTGGTAGAATACCAAGTTCC
ATTAGCAACATCAAATCTTTGAAGAAGCTGGACCTTGGTGCAAGTGGCTTTTCTGGAAAGCTGCCCTCATCTATTGGTAA
GCTTAAATCTTTGAGTTTATTGCAAGTCTCTGGGTTGGAACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23139.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis