Browse Element(s) Details


Os.11371.1.S1_at

Description gb:AB051108.1
DB_XREF= gi:19071829
GEN=RIP2
TID=Os.11371.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11371 (NCBI UniGene Cluster)
DEF=Oryza sativa RIP2 mRNA for ribosome inactivating protein 2, complete cds.
PROD=ribosome inactivating protein 2
FL= gb:AB051108.1 gb:AK103707.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0674011/11Ribosome inactivating protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06700OsAffx.30352.2.S1_at11/111+3158122..3164468retrotransposon protein, putative, unclassified
LOC_Os01g06710OsAffx.30352.3.S1_at11/111+3164802..3168215hypothetical protein
LOC_Os01g06710Os.18947.1.S1_at2/111+3164802..3168215hypothetical protein
LOC_Os01g06710Os.39421.1.S1_at2/111+3164802..3168215hypothetical protein
LOC_Os01g06710OsAffx.30352.1.S1_at1/111+3164802..3168215hypothetical protein
LOC_Os01g06710Os.27342.1.S2_at1/111+3164802..3168215hypothetical protein
LOC_Os01g06710OsAffx.20967.1.S1_x_at1/111+3164802..3168215hypothetical protein
LOC_Os01g06720OsAffx.23138.1.S1_at10/111+3173346..3176404Leucine Rich Repeat family protein
LOC_Os01g06730Os.24977.1.A1_at7/111+3178941..3182009Leucine Rich Repeat family protein
LOC_Os01g06740Os.11371.1.S1_at11/111+3185839..3187132Ribosome inactivating protein, expressed
LOC_Os01g06740Os.1665.2.S1_x_at1/111+3185839..3187132Ribosome inactivating protein, expressed
LOC_Os01g06750OsAffx.22944.3.S1_at11/111+3193788..3196812Leucine Rich Repeat family protein
LOC_Os01g06750OsAffx.22944.1.S1_at6/111+3193788..3196812Leucine Rich Repeat family protein
LOC_Os01g06760OsAffx.23139.1.S1_at11/111+3198025..3201054Leucine Rich Repeat family protein
LOC_Os01g06770OsAffx.22848.4.S1_at2/111+3205943..3211901retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g06770OsAffx.22848.4.S1_x_at1/111+3205943..3211901retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g06770OsAffx.22848.3.S1_x_at1/111+3205943..3211901retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11371.1.S1_at--542--1571Chr01:3186380..3186404 (25 bp)
AGCTAGAGGACTCCAACTCGGCGTC
LOC_Os01g06740
Os.11371.1.S1_at--849--3591Chr01:3186364..3186388 (25 bp)
CTCGGCGTCCAAGCACAACAAGGTG
LOC_Os01g06740
Os.11371.1.S1_at--1001--2931Chr01:3186219..3186243 (25 bp)
AAGGCGACGGCGCTTCAGCTGTTTC
LOC_Os01g06740
Os.11371.1.S1_at--899--7611Chr01:3186192..3186216 (25 bp)
GGGAACTAAAGTTGCTGCTGCTGGT
LOC_Os01g06740
Os.11371.1.S1_at--399--191Chr01:3186165..3186189 (25 bp)
ATTTCAGCTTGCTTGATCGAACAGC
LOC_Os01g06740
Os.11371.1.S1_at--819--1491Chr01:3186143..3186167 (25 bp)
AGCAAATCAATCTGAGCGACTCGAG
LOC_Os01g06740
Os.11371.1.S1_at--67--6091Chr01:3186121..3186145 (25 bp)
GAGTAAAATTGATTCTCCCTCCAAC
LOC_Os01g06740
Os.11371.1.S1_at--812--6791Chr01:3186076..3186100 (25 bp)
GTTATTAATCTGGACAACTGCGTGT
LOC_Os01g06740
Os.11371.1.S1_at--122--2211Chr01:3186063..3186087 (25 bp)
ACAACTGCGTGTCCAGATACATAGA
LOC_Os01g06740
Os.11371.1.S1_at--903--3091Chr01:3185982..3186006 (25 bp)
AATAGCCTCTATAGTGTGATGTAAC
LOC_Os01g06740
Os.11371.1.S1_at--54--8751Chr01:3185963..3185987 (25 bp)
TGTAACTACTATATACTCCCTTCGT
LOC_Os01g06740
Target Sequence 
AGCTAGAGGACTCCAACTCGGCGTCCAAGCACAACAAGGTGGATACAAAGAAGATGGAGCAGGAGAAGAAGGCGTGGGAG
GCGGCGGAGAAGTTGGCCGTGGAGGCGGCCAAGGCGGTGGGGATCCTGCTGTTCGTCGAGAAGGTGCCGGCCGGGATGAC
GAAGGCGACGGCGCTTCAGCTGTTTCATGGGAACTAAAGTTGCTGCTGCTGGTAGATTTCAGCTTGCTTGATCGAACAGC
AAATCAATCTGAGCGACTCGAGTAAAATTGATTCTCCCTCCAACCCAAAATATAAGTATTTTCAGTTATTAATCTGGACA
ACTGCGTGTCCAGATACATAGACAAAAGTTGTTATATTTTGAGACGGTTGTTATATTTTGGGACGGAGGCAGTAGTTAAA
TAGCCTCTATAGTGTGATGTAACTACTATATACTCCCTTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11371.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis