Browse Element(s) Details


Os.12941.1.S1_at

Description gb:AU222516
DB_XREF= gi:15008128
DB_XREF=AU222516
CLONE=C52662
TID=Os.12941.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.12941 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g068361/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06780Os.29987.1.S1_at5/111+3214518..3215081retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g06780Os.38172.1.S1_x_at4/111+3214518..3215081retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g06780Os.43567.1.S1_x_at3/111+3214518..3215081retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g06790OsAffx.1949.1.S1_at11/111+3219105..3223059Leucine Rich Repeat family protein, expressed
LOC_Os01g06800OsAffx.23140.2.A1_at11/111+3225886..3226584hypothetical protein
LOC_Os01g06810NANA1+3227687..3232070retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g06820NANA1+3232789..3234601Leucine Rich Repeat family protein
LOC_Os01g06836Os.12941.1.S1_at1/111+3237929..3240117Leucine Rich Repeat family protein
LOC_Os01g06852OsAffx.10943.1.S1_x_at10/111+3243801..3246770transposon protein, putative, unclassified
LOC_Os01g06852OsAffx.10943.2.S1_at9/111+3243801..3246770transposon protein, putative, unclassified
LOC_Os01g06852OsAffx.10943.1.S1_at5/111+3243801..3246770transposon protein, putative, unclassified
LOC_Os01g06870NANA1+3248006..3249526Leucine Rich Repeat family protein, expressed
LOC_Os01g06876Os.55776.1.S1_at11/111+3253624..3254703Leucine Rich Repeat family protein, expressed
LOC_Os01g06876Os.55776.1.S1_x_at10/111+3253624..3254703Leucine Rich Repeat family protein, expressed
LOC_Os01g06882OsAffx.10944.1.S1_at11/111+3254746..3255691expressed protein
LOC_Os01g06882OsAffx.10944.1.S1_x_at11/111+3254746..3255691expressed protein
LOC_Os01g06882Os.55647.1.A1_at11/111+3254746..3255691expressed protein
LOC_Os01g06890Os.18302.1.S1_at5/111+3256240..3259256Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12941.1.S1_at--170--431Chr01:3235395..3235419 (25 bp)
ATCATTGCCATCTCTATTTGCAGGG
NONE
Os.12941.1.S1_at--333--4431Chr01:3235401..3235425 (25 bp)
GCCATCTCTATTTGCAGGGTATCCT
NONE
Os.12941.1.S1_at--276--3471Chr01:3235415..3235439 (25 bp)
CAGGGTATCCTGTTAAATTATAGTC
NONE
Os.12941.1.S1_at--1013--151Chr01:3235431..3235455 (25 bp)
ATTATAGTCAACTGACAGACCCGAG
NONE
Os.12941.1.S1_at--459--5651Chr01:3235444..3235468 (25 bp)
GACAGACCCGAGAACCAAATCATTT
NONE
Os.12941.1.S1_at--1154--3052Chr01:3235461..3235485 (25 bp)
AATCATTTTTCCAGCTTACATATCG
NONE
Os.12941.1.S1_at--550--10471Chr01:3235476..3235500 (25 bp)
TTACATATCGTAACTATCCCAGCCT
NONE
Os.12941.1.S1_at--1121--7031Chr01:3235485..3235509 (25 bp)
GTAACTATCCCAGCCTTAAGTCAAA
NONE
Os.12941.1.S1_at--941--3191Chr01:3235524..3235548 (25 bp)
CAATGCAACTTAGCTCTATCTGGAG
NONE
Os.12941.1.S1_at--115--3671Chr01:3235532..3235556 (25 bp)
CTTAGCTCTATCTGGAGGATCAAGA
NONE
Os.12941.1.S1_at--243--2791Chr01:3235553..3235577 (25 bp)
AAGAGTATCTCTTACCTAAGACTGT
NONE
Target Sequence 
ATCATTGCCATCTCTATTTGCAGGGTATCCTGTTAAATTATAGTCAACTGACAGACCCGAGAACCAAATCATTTTTCCAG
CTTACATATCGTAACTATCCCAGCCTTAAGTCAAATAAGTTGACAGCCNCAATGCAACTTAGCTCTATCTGGAGGATCAA
GAGTATCTCTTACCTAAGACTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12941.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis