Browse Element(s) Details


Os.18302.1.S1_at

Description gb:AK072107.1
DB_XREF= gi:32982130
TID=Os.18302.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18302 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1189A09.18 (B1189A09.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013118K10, full insert sequence.
FL= gb:AK072107.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0692011/11Leucine Rich Repeat family protein, expressed
LOC_Os01g068905/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06882OsAffx.10944.1.S1_at11/111+3254746..3255691expressed protein
LOC_Os01g06882OsAffx.10944.1.S1_x_at11/111+3254746..3255691expressed protein
LOC_Os01g06882Os.55647.1.A1_at11/111+3254746..3255691expressed protein
LOC_Os01g06890Os.18302.1.S1_at5/111+3256240..3259256Leucine Rich Repeat family protein
LOC_Os01g06900OsAffx.23141.1.S1_at11/111+3269641..3273218Leucine Rich Repeat family protein, expressed
LOC_Os01g06910OsAffx.1952.1.S1_at10/111+3274107..3274607hypothetical protein
LOC_Os01g06920Os.18302.1.S1_at11/111+3279997..3283159Leucine Rich Repeat family protein, expressed
LOC_Os01g06940OsAffx.23143.5.S1_x_at6/111+3285125..3285692pollen Ole e 1 allergen and extensin family protein, putative, expressed
LOC_Os01g06940OsAffx.23143.5.S1_at4/111+3285125..3285692pollen Ole e 1 allergen and extensin family protein, putative, expressed
LOC_Os01g06940OsAffx.23143.3.S1_x_at1/111+3285125..3285692pollen Ole e 1 allergen and extensin family protein, putative, expressed
LOC_Os01g06950NANA1+3286535..3286999hypothetical protein
LOC_Os01g06960OsAffx.23143.1.S1_x_at9/111+3287563..3288343Pollen proteins Ole e I family protein
LOC_Os01g06960OsAffx.23143.4.S1_s_at2/111+3287563..3288343Pollen proteins Ole e I family protein
LOC_Os01g06960OsAffx.23143.3.S1_x_at1/111+3287563..3288343Pollen proteins Ole e I family protein
LOC_Os01g06970NANA1+3289787..3290291hypothetical protein
LOC_Os01g06980OsAffx.23143.3.S1_x_at11/111+3291426..3292014pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g06980OsAffx.23143.3.S1_at11/111+3291426..3292014pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g06980OsAffx.23143.1.S1_x_at3/111+3291426..3292014pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g06980OsAffx.23143.4.S1_s_at1/111+3291426..3292014pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g06990OsAffx.23143.4.S1_s_at2/111+3294652..3295212Pollen proteins Ole e I family protein
LOC_Os01g06990OsAffx.23143.3.S1_x_at2/111+3294652..3295212Pollen proteins Ole e I family protein
LOC_Os01g06990OsAffx.23143.1.S1_x_at1/111+3294652..3295212Pollen proteins Ole e I family protein
LOC_Os01g07000OsAffx.23143.4.S1_s_at11/111+3297244..3297812pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g07000OsAffx.23143.1.S1_x_at2/111+3297244..3297812pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g07010OsAffx.23143.1.S1_x_at11/111+3300325..3300894Pollen proteins Ole e I family protein
LOC_Os01g07010OsAffx.23143.4.S1_s_at2/111+3300325..3300894Pollen proteins Ole e I family protein
LOC_Os01g07010OsAffx.23143.3.S1_x_at1/111+3300325..3300894Pollen proteins Ole e I family protein
LOC_Os01g07020OsAffx.23143.1.S1_x_at6/111+3303121..3303696Pollen proteins Ole e I family protein
LOC_Os01g07020OsAffx.23143.3.S1_x_at2/111+3303121..3303696Pollen proteins Ole e I family protein
LOC_Os01g07020OsAffx.23143.4.S1_s_at2/111+3303121..3303696Pollen proteins Ole e I family protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18302.1.S1_at--1119--3732Chr01:3282568..3282592 (25 bp)
CTCAATGGTCTCAACATGTCACATA
LOC_Os01g06920
Os.18302.1.S1_at--158--3392Chr01:3282619..3282643 (25 bp)
CAGCTTGCTAGTCTGCATCAACTTG
LOC_Os01g06920
Os.18302.1.S1_at--692--6372Chr01:3282681..3282705 (25 bp)
GATCCCTCAAAAATTAGCATCCTTG
LOC_Os01g06920
Os.18302.1.S1_at--627--572Chr01:3282699..3282723 (25 bp)
ATCCTTGGACTTCCTATCAACATTG
LOC_Os01g06920
Os.18302.1.S1_at--293--5431Chr01:3282723..3282747 (25 bp)
GAACCTATCCGATAATATGCTGGAG
LOC_Os01g06920
Os.18302.1.S1_at--822--311Chr01:3282754..3282778 (25 bp)
ATACCGGAGTCACCTCATTTCTTGA
LOC_Os01g06920
Os.18302.1.S1_at--417--5591Chr01:3282777..3282801 (25 bp)
GACACTCCCCAATAGTTCATTTATA
LOC_Os01g06920
Os.18302.1.S1_at--922--8651Chr01:3282817..3282841 (25 bp)
TGTGGGCCTCCATTGTCGAAAGAAT
LOC_Os01g06920
Os.18302.1.S1_at--790--8851Chr01:3282866..3282890 (25 bp)
TGATGCCACACCTTTCCGAAGAGAA
LOC_Os01g06920
Os.18302.1.S1_at--549--1112Chr01:3282960..3282984 (25 bp)
AGTGAGGAAACCTTGCATTGGCAAA
LOC_Os01g06920
Os.18302.1.S1_at--967--1131Chr01:3283037..3283061 (25 bp)
AGTCTGCTTCCCCTTGTAAATTTAG
LOC_Os01g06920
Target Sequence 
CTCAATGGTCTCAACATGTCACATAATGCTCTTACAGGACCAATTCCCAACCAGCTTGCTAGTCTGCATCAACTTGAGTC
TTTGGACCTCTCATCAAATAAGCTTTCTGGGGAGATCCCTCAAAAATTAGCATCCTTGGACTTCCTATCAACATTGAACC
TATCCGATAATATGCTGGAGGGAAGAATACCGGAGTCACCTCATTTCTTGACACTCCCCAATAGTTCATTTATACGAAAT
GCTGGTTTGTGTGGGCCTCCATTGTCGAAAGAATGCAGCAACAAATCAACATCAAATGTGATGCCACACCTTTCCGAAGA
GAAATCTGCAGACATTATACTATTTCTCTTTGTTGGATTGGGTTTTGGTGTTGGGTTTGCTATTGCAATTGTAGTGAGGA
AACCTTGCATTGGCAAATAATCTTCATCAAATCCACCCATTTTTATATTTATATGTTCAGGAGTTTGCCAGTCTGCTTCC
CCTTGTAAATTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18302.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis