Browse Element(s) Details


OsAffx.1952.1.S1_at

Description tigr:9629.m00620
TID=OsAffx.1952.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0691010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06870NANA1+3248006..3249526Leucine Rich Repeat family protein, expressed
LOC_Os01g06876Os.55776.1.S1_at11/111+3253624..3254703Leucine Rich Repeat family protein, expressed
LOC_Os01g06876Os.55776.1.S1_x_at10/111+3253624..3254703Leucine Rich Repeat family protein, expressed
LOC_Os01g06882OsAffx.10944.1.S1_at11/111+3254746..3255691expressed protein
LOC_Os01g06882OsAffx.10944.1.S1_x_at11/111+3254746..3255691expressed protein
LOC_Os01g06882Os.55647.1.A1_at11/111+3254746..3255691expressed protein
LOC_Os01g06890Os.18302.1.S1_at5/111+3256240..3259256Leucine Rich Repeat family protein
LOC_Os01g06900OsAffx.23141.1.S1_at11/111+3269641..3273218Leucine Rich Repeat family protein, expressed
LOC_Os01g06910OsAffx.1952.1.S1_at10/111+3274107..3274607hypothetical protein
LOC_Os01g06920Os.18302.1.S1_at11/111+3279997..3283159Leucine Rich Repeat family protein, expressed
LOC_Os01g06940OsAffx.23143.5.S1_x_at6/111+3285125..3285692pollen Ole e 1 allergen and extensin family protein, putative, expressed
LOC_Os01g06940OsAffx.23143.5.S1_at4/111+3285125..3285692pollen Ole e 1 allergen and extensin family protein, putative, expressed
LOC_Os01g06940OsAffx.23143.3.S1_x_at1/111+3285125..3285692pollen Ole e 1 allergen and extensin family protein, putative, expressed
LOC_Os01g06950NANA1+3286535..3286999hypothetical protein
LOC_Os01g06960OsAffx.23143.1.S1_x_at9/111+3287563..3288343Pollen proteins Ole e I family protein
LOC_Os01g06960OsAffx.23143.4.S1_s_at2/111+3287563..3288343Pollen proteins Ole e I family protein
LOC_Os01g06960OsAffx.23143.3.S1_x_at1/111+3287563..3288343Pollen proteins Ole e I family protein
LOC_Os01g06970NANA1+3289787..3290291hypothetical protein
LOC_Os01g06980OsAffx.23143.3.S1_x_at11/111+3291426..3292014pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g06980OsAffx.23143.3.S1_at11/111+3291426..3292014pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g06980OsAffx.23143.1.S1_x_at3/111+3291426..3292014pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g06980OsAffx.23143.4.S1_s_at1/111+3291426..3292014pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g06990OsAffx.23143.4.S1_s_at2/111+3294652..3295212Pollen proteins Ole e I family protein
LOC_Os01g06990OsAffx.23143.3.S1_x_at2/111+3294652..3295212Pollen proteins Ole e I family protein
LOC_Os01g06990OsAffx.23143.1.S1_x_at1/111+3294652..3295212Pollen proteins Ole e I family protein
LOC_Os01g07000OsAffx.23143.4.S1_s_at11/111+3297244..3297812pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g07000OsAffx.23143.1.S1_x_at2/111+3297244..3297812pollen Ole e 1 allergen and extensin family protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1952.1.S1_at--242--1231Chr01:3274551..3274575 (25 bp)
AGTTCATCCTATTGCCATCGGTCTC
LOC_Os01g06910
OsAffx.1952.1.S1_at--145--6751Chr01:3274550..3274574 (25 bp)
GTTCATCCTATTGCCATCGGTCTCG
LOC_Os01g06910
OsAffx.1952.1.S1_at--882--9611Chr01:3274548..3274572 (25 bp)
TCATCCTATTGCCATCGGTCTCGTC
LOC_Os01g06910
OsAffx.1952.1.S1_at--684--6711Chr01:3274503..3274527 (25 bp)
GTTCGAGGAAATGCGCCTCTCAGCG
LOC_Os01g06910
OsAffx.1952.1.S1_at--685--951Chr01:3274498..3274522 (25 bp)
AGGAAATGCGCCTCTCAGCGGCTGC
LOC_Os01g06910
OsAffx.1952.1.S1_at--243--2291Chr01:3274495..3274519 (25 bp)
AAATGCGCCTCTCAGCGGCTGCAAT
LOC_Os01g06910
OsAffx.1952.1.S1_at--263--611Chr01:3274493..3274517 (25 bp)
ATGCGCCTCTCAGCGGCTGCAATGT
LOC_Os01g06910
OsAffx.1952.1.S1_at--907--3751Chr01:3274487..3274511 (25 bp)
CTCTCAGCGGCTGCAATGTACAGGT
LOC_Os01g06910
OsAffx.1952.1.S1_at--470--3751NONE
CTCAGCGGCTGCAATGTACAGGTCA
NONE
OsAffx.1952.1.S1_at--530--7031Chr01:3274140..3274160 (21 bp)
GTACAGGTCATTGTCAATCTTTCTG
LOC_Os01g06910
OsAffx.1952.1.S1_at--633--3471Chr01:3274137..3274160 (24 bp)
CAGGTCATTGTCAATCTTTCTGAGA
LOC_Os01g06910
Target Sequence 
AGTTCATCCTATTGCCATCGGTCTCGTCGTCCTCTCCTACCACCACGTGTTCGAGGAAATGCGCCTCTCAGCGGCTGCAA
TGTACAGGTCATTGTCAATCTTTCTGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1952.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis