Browse Element(s) Details


OsAffx.10944.1.S1_at

Description tigr:9629.m00617
TID=OsAffx.10944.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0688211/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06810NANA1+3227687..3232070retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g06820NANA1+3232789..3234601Leucine Rich Repeat family protein
LOC_Os01g06836Os.12941.1.S1_at1/111+3237929..3240117Leucine Rich Repeat family protein
LOC_Os01g06852OsAffx.10943.1.S1_x_at10/111+3243801..3246770transposon protein, putative, unclassified
LOC_Os01g06852OsAffx.10943.2.S1_at9/111+3243801..3246770transposon protein, putative, unclassified
LOC_Os01g06852OsAffx.10943.1.S1_at5/111+3243801..3246770transposon protein, putative, unclassified
LOC_Os01g06870NANA1+3248006..3249526Leucine Rich Repeat family protein, expressed
LOC_Os01g06876Os.55776.1.S1_at11/111+3253624..3254703Leucine Rich Repeat family protein, expressed
LOC_Os01g06876Os.55776.1.S1_x_at10/111+3253624..3254703Leucine Rich Repeat family protein, expressed
LOC_Os01g06882OsAffx.10944.1.S1_at11/111+3254746..3255691expressed protein
LOC_Os01g06882OsAffx.10944.1.S1_x_at11/111+3254746..3255691expressed protein
LOC_Os01g06882Os.55647.1.A1_at11/111+3254746..3255691expressed protein
LOC_Os01g06890Os.18302.1.S1_at5/111+3256240..3259256Leucine Rich Repeat family protein
LOC_Os01g06900OsAffx.23141.1.S1_at11/111+3269641..3273218Leucine Rich Repeat family protein, expressed
LOC_Os01g06910OsAffx.1952.1.S1_at10/111+3274107..3274607hypothetical protein
LOC_Os01g06920Os.18302.1.S1_at11/111+3279997..3283159Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10944.1.S1_at--878--9091Chr01:3254779..3254803 (25 bp)
TGCTCTTTGCGCTAACCTGTGCGGT
LOC_Os01g06882
OsAffx.10944.1.S1_at--679--4811Chr01:3254780..3254804 (25 bp)
GCTCTTTGCGCTAACCTGTGCGGTG
LOC_Os01g06882
OsAffx.10944.1.S1_at--1001--3751Chr01:3254781..3254805 (25 bp)
CTCTTTGCGCTAACCTGTGCGGTGG
LOC_Os01g06882
OsAffx.10944.1.S1_at--650--10271Chr01:3254784..3254808 (25 bp)
TTTGCGCTAACCTGTGCGGTGGGCC
LOC_Os01g06882
OsAffx.10944.1.S1_at--105--10631Chr01:3254785..3254809 (25 bp)
TTGCGCTAACCTGTGCGGTGGGCCG
LOC_Os01g06882
OsAffx.10944.1.S1_at--144--4571Chr01:3254787..3254811 (25 bp)
GCGCTAACCTGTGCGGTGGGCCGGT
LOC_Os01g06882
OsAffx.10944.1.S1_at--591--7711Chr01:3254809..3254833 (25 bp)
GGTGGCGCATTCTCTTGAACACCTG
LOC_Os01g06882
OsAffx.10944.1.S1_at--266--7551Chr01:3254810..3254834 (25 bp)
GTGGCGCATTCTCTTGAACACCTGG
LOC_Os01g06882
OsAffx.10944.1.S1_at--635--8471Chr01:3254811..3254835 (25 bp)
TGGCGCATTCTCTTGAACACCTGGT
LOC_Os01g06882
OsAffx.10944.1.S1_at--872--8371Chr01:3254812..3254836 (25 bp)
GGCGCATTCTCTTGAACACCTGGTG
LOC_Os01g06882
OsAffx.10944.1.S1_at--712--5791Chr01:3254872..3254896 (25 bp)
GACGAAGCAGACGGACAGGACGGGA
LOC_Os01g06882
Target Sequence 
TGCTCTTTGCGCTAACCTGTGCGGTGGGCCGGTGGCGCATTCTCTTGAACACCTGGTGGCCCTCGTGGTGTGGTGGTGGA
AGAAGAGGGCGATGACGAAGCAGACGGACAGGACGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10944.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis