Browse Element(s) Details


OsAffx.23141.1.S1_at

Description tigr:9629.m00619
TID=OsAffx.23141.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0690011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06852OsAffx.10943.1.S1_x_at10/111+3243801..3246770transposon protein, putative, unclassified
LOC_Os01g06852OsAffx.10943.2.S1_at9/111+3243801..3246770transposon protein, putative, unclassified
LOC_Os01g06852OsAffx.10943.1.S1_at5/111+3243801..3246770transposon protein, putative, unclassified
LOC_Os01g06870NANA1+3248006..3249526Leucine Rich Repeat family protein, expressed
LOC_Os01g06876Os.55776.1.S1_at11/111+3253624..3254703Leucine Rich Repeat family protein, expressed
LOC_Os01g06876Os.55776.1.S1_x_at10/111+3253624..3254703Leucine Rich Repeat family protein, expressed
LOC_Os01g06882OsAffx.10944.1.S1_at11/111+3254746..3255691expressed protein
LOC_Os01g06882OsAffx.10944.1.S1_x_at11/111+3254746..3255691expressed protein
LOC_Os01g06882Os.55647.1.A1_at11/111+3254746..3255691expressed protein
LOC_Os01g06890Os.18302.1.S1_at5/111+3256240..3259256Leucine Rich Repeat family protein
LOC_Os01g06900OsAffx.23141.1.S1_at11/111+3269641..3273218Leucine Rich Repeat family protein, expressed
LOC_Os01g06910OsAffx.1952.1.S1_at10/111+3274107..3274607hypothetical protein
LOC_Os01g06920Os.18302.1.S1_at11/111+3279997..3283159Leucine Rich Repeat family protein, expressed
LOC_Os01g06940OsAffx.23143.5.S1_x_at6/111+3285125..3285692pollen Ole e 1 allergen and extensin family protein, putative, expressed
LOC_Os01g06940OsAffx.23143.5.S1_at4/111+3285125..3285692pollen Ole e 1 allergen and extensin family protein, putative, expressed
LOC_Os01g06940OsAffx.23143.3.S1_x_at1/111+3285125..3285692pollen Ole e 1 allergen and extensin family protein, putative, expressed
LOC_Os01g06950NANA1+3286535..3286999hypothetical protein
LOC_Os01g06960OsAffx.23143.1.S1_x_at9/111+3287563..3288343Pollen proteins Ole e I family protein
LOC_Os01g06960OsAffx.23143.4.S1_s_at2/111+3287563..3288343Pollen proteins Ole e I family protein
LOC_Os01g06960OsAffx.23143.3.S1_x_at1/111+3287563..3288343Pollen proteins Ole e I family protein
LOC_Os01g06970NANA1+3289787..3290291hypothetical protein
LOC_Os01g06980OsAffx.23143.3.S1_x_at11/111+3291426..3292014pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g06980OsAffx.23143.3.S1_at11/111+3291426..3292014pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g06980OsAffx.23143.1.S1_x_at3/111+3291426..3292014pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g06980OsAffx.23143.4.S1_s_at1/111+3291426..3292014pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g06990OsAffx.23143.4.S1_s_at2/111+3294652..3295212Pollen proteins Ole e I family protein
LOC_Os01g06990OsAffx.23143.3.S1_x_at2/111+3294652..3295212Pollen proteins Ole e I family protein
LOC_Os01g06990OsAffx.23143.1.S1_x_at1/111+3294652..3295212Pollen proteins Ole e I family protein
LOC_Os01g07000OsAffx.23143.4.S1_s_at11/111+3297244..3297812pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g07000OsAffx.23143.1.S1_x_at2/111+3297244..3297812pollen Ole e 1 allergen and extensin family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23141.1.S1_at--983--7951Chr01:3272421..3272445 (25 bp)
GGATCACTTCTCAAGCTTGCAAATA
LOC_Os01g06900
OsAffx.23141.1.S1_at--1159--6231Chr01:3272530..3272554 (25 bp)
GATGGACAAGTTTTGGAGCACCAAA
LOC_Os01g06900
OsAffx.23141.1.S1_at--414--451Chr01:3272575..3272599 (25 bp)
ATCTATCGAGACATCATCACTATCA
LOC_Os01g06900
OsAffx.23141.1.S1_at--421--9751Chr01:3272742..3272766 (25 bp)
TAATTTCACTGGAGCAATCCCGCAA
LOC_Os01g06900
OsAffx.23141.1.S1_at--1123--471Chr01:3272758..3272782 (25 bp)
ATCCCGCAACAGCTTGGTAACTTGG
LOC_Os01g06900
OsAffx.23141.1.S1_at--316--2071Chr01:3272777..3272801 (25 bp)
ACTTGGCTCAGCTAGAGTCCTTGGA
LOC_Os01g06900
OsAffx.23141.1.S1_at--391--2071Chr01:3272845..3272869 (25 bp)
ACATTTCTAACTTCTCTTTCTTGGC
LOC_Os01g06900
OsAffx.23141.1.S1_at--292--3751Chr01:3272858..3272882 (25 bp)
CTCTTTCTTGGCTGAATCTTTCGAA
LOC_Os01g06900
OsAffx.23141.1.S1_at--559--5371Chr01:3272897..3272921 (25 bp)
GAAGAATACCACAGAGCAACCAGTT
LOC_Os01g06900
OsAffx.23141.1.S1_at--210--5151Chr01:3272912..3272936 (25 bp)
GCAACCAGTTCTTGTCGTTTTCCAA
LOC_Os01g06900
OsAffx.23141.1.S1_at--151--7211Chr01:3272925..3272949 (25 bp)
GTCGTTTTCCAACAGTTCATTTGAA
LOC_Os01g06900
Target Sequence 
GGATCACTTCTCAAGCTTGCAAATACTTGATTTAGCCAATAACACTCTATCTGGTCAGTTGCCCCCAAAATGGTTTGAGA
AACTGAAATCAATGATGGCAAATGTCGATGATGGACAAGTTTTGGAGCACCAAACAAACTTTTCACAAGGATTTATCTAT
CGAGACATCATCACTATCACATACAAAGGGTTTGATATGACATTCAATAGAATGCTAACTACCTTTAAAGCAATTGATTT
CTCAAATAACTCATTTGTTGGAGTTATTCCTGGAACGATAGGGAGTCTTGTTTCACTTCATGGACTTAACATGTCACATA
ATAATTTCACTGGAGCAATCCCGCAACAGCTTGGTAACTTGGCTCAGCTAGAGTCCTTGGATCTCTCTTGGAACCAGCTC
TCAGGGGTAATACCACATGAGTTAACATTTCTAACTTCTCTTTCTTGGCTGAATCTTTCGAATAACAACTTGACTGGAAG
AATACCACAGAGCAACCAGTTCTTGTCGTTTTCCAACAGTTCATTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23141.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis