Browse Element(s) Details


OsAffx.23143.4.S1_s_at

Description gb:NM_184495.1
DB_XREF= gi:34896079
GEN=B1189A09.25
TID=OsAffx.23143.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1189A09.25 (B1189A09.25), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0700011/11pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g069902/11Pollen proteins Ole e I family protein
LOC_Os01g070102/11Pollen proteins Ole e I family protein
LOC_Os01g069602/11Pollen proteins Ole e I family protein
LOC_Os01g070202/11Pollen proteins Ole e I family protein
LOC_Os01g069801/11pollen Ole e 1 allergen and extensin family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06900OsAffx.23141.1.S1_at11/111+3269641..3273218Leucine Rich Repeat family protein, expressed
LOC_Os01g06910OsAffx.1952.1.S1_at10/111+3274107..3274607hypothetical protein
LOC_Os01g06920Os.18302.1.S1_at11/111+3279997..3283159Leucine Rich Repeat family protein, expressed
LOC_Os01g06940OsAffx.23143.5.S1_x_at6/111+3285125..3285692pollen Ole e 1 allergen and extensin family protein, putative, expressed
LOC_Os01g06940OsAffx.23143.5.S1_at4/111+3285125..3285692pollen Ole e 1 allergen and extensin family protein, putative, expressed
LOC_Os01g06940OsAffx.23143.3.S1_x_at1/111+3285125..3285692pollen Ole e 1 allergen and extensin family protein, putative, expressed
LOC_Os01g06950NANA1+3286535..3286999hypothetical protein
LOC_Os01g06960OsAffx.23143.1.S1_x_at9/111+3287563..3288343Pollen proteins Ole e I family protein
LOC_Os01g06960OsAffx.23143.4.S1_s_at2/111+3287563..3288343Pollen proteins Ole e I family protein
LOC_Os01g06960OsAffx.23143.3.S1_x_at1/111+3287563..3288343Pollen proteins Ole e I family protein
LOC_Os01g06970NANA1+3289787..3290291hypothetical protein
LOC_Os01g06980OsAffx.23143.3.S1_x_at11/111+3291426..3292014pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g06980OsAffx.23143.3.S1_at11/111+3291426..3292014pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g06980OsAffx.23143.1.S1_x_at3/111+3291426..3292014pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g06980OsAffx.23143.4.S1_s_at1/111+3291426..3292014pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g06990OsAffx.23143.4.S1_s_at2/111+3294652..3295212Pollen proteins Ole e I family protein
LOC_Os01g06990OsAffx.23143.3.S1_x_at2/111+3294652..3295212Pollen proteins Ole e I family protein
LOC_Os01g06990OsAffx.23143.1.S1_x_at1/111+3294652..3295212Pollen proteins Ole e I family protein
LOC_Os01g07000OsAffx.23143.4.S1_s_at11/111+3297244..3297812pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g07000OsAffx.23143.1.S1_x_at2/111+3297244..3297812pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g07010OsAffx.23143.1.S1_x_at11/111+3300325..3300894Pollen proteins Ole e I family protein
LOC_Os01g07010OsAffx.23143.4.S1_s_at2/111+3300325..3300894Pollen proteins Ole e I family protein
LOC_Os01g07010OsAffx.23143.3.S1_x_at1/111+3300325..3300894Pollen proteins Ole e I family protein
LOC_Os01g07020OsAffx.23143.1.S1_x_at6/111+3303121..3303696Pollen proteins Ole e I family protein
LOC_Os01g07020OsAffx.23143.3.S1_x_at2/111+3303121..3303696Pollen proteins Ole e I family protein
LOC_Os01g07020OsAffx.23143.4.S1_s_at2/111+3303121..3303696Pollen proteins Ole e I family protein
LOC_Os01g07030OsAffx.10948.1.S1_at11/111+3309264..3310075Pollen proteins Ole e I family protein, expressed
LOC_Os01g07030OsAffx.23143.1.S1_x_at1/111+3309264..3310075Pollen proteins Ole e I family protein, expressed
LOC_Os01g07040Os.46013.1.S1_at8/111+3311804..3312411Pollen proteins Ole e I family protein, expressed
LOC_Os01g07040OsAffx.23143.1.S1_x_at1/111+3311804..3312411Pollen proteins Ole e I family protein, expressed
LOC_Os01g07050OsAffx.23143.1.S1_x_at1/111+3314356..3314913Pollen proteins Ole e I family protein, expressed
LOC_Os01g07060OsAffx.10949.1.S1_x_at11/111+3317253..3317837Pollen proteins Ole e I family protein
LOC_Os01g07070Os.45300.1.A1_at11/111+3319592..3325053transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g07070Os.8829.1.S1_at11/111+3319592..3325053transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23143.4.S1_s_at--74--6152Chr01:3297552..3297576 (25 bp)
GAGGTGTCCGTCATCTGCCACGATG
LOC_Os01g07000
OsAffx.23143.4.S1_s_at--390--3052Chr01:3297522..3297546 (25 bp)
AATCGCGTCATGGTGAGGTGCCGTC
LOC_Os01g07000
OsAffx.23143.4.S1_s_at--990--8071Chr01:3297497..3297521 (25 bp)
GGACAGTCACCGACGAAAACGGCTA
LOC_Os01g07000
OsAffx.23143.4.S1_s_at--1032--4134Chr01:3303343..3303367 (25 bp)
CGCGGAGCTCGATGAGACCAAAGTC
LOC_Os01g07020
OsAffx.23143.4.S1_s_at--549--9872Chr01:3300513..3300537 (25 bp)
TACATGGGCGATCCACGCAAGGCGT
LOC_Os01g07010
OsAffx.23143.4.S1_s_at--840--9071Chr01:3297408..3297432 (25 bp)
TGCTATGTGCGGCTTCGGACCTCAC
LOC_Os01g07000
OsAffx.23143.4.S1_s_at--1151--8091Chr01:3297392..3297416 (25 bp)
GGACCTCACTGGACTTCGAATGCAA
LOC_Os01g07000
OsAffx.23143.4.S1_s_at--91--3571Chr01:3297355..3297379 (25 bp)
CATCAACAACTCTAGCATCCAGGGA
LOC_Os01g07000
OsAffx.23143.4.S1_s_at--1127--5932Chr01:3297332..3297356 (25 bp)
GAGCACCGCTACGTGACGAGGGCAA
LOC_Os01g07000
OsAffx.23143.4.S1_s_at--591--7733Chr01:3297305..3297329 (25 bp)
GGTGGGCCGACCATGACTACTATAA
LOC_Os01g07000
OsAffx.23143.4.S1_s_at--916--2031Chr01:3297287..3297311 (25 bp)
ACTATAACGTCATGTACGCTGCCGG
LOC_Os01g07000
Target Sequence 
GAGGTGTCCGTCATCTGCCACGATGCCAAGAATCGCGTCATGGTGAGGTGCCGTCGGACAGTCACCGACGAAAACGGCTA
CTTCCGCGCGGAGCTCGATGAGACCAAAGTCTCCGACTTCTACATGGGCGATCCACGCAAGGCGTGCTATGTGCGGCTTC
GGACCTCACTGGACTTCGAATGCAATAACCCCACAAACATCAACAACTCTAGCATCCAGGGAGCACCGCTACGTGACGAG
GGCAAGCGGTGGGCCGACCATGACTACTATAACGTCATGTACGCTGCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23143.4.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis