Browse Element(s) Details

Os.46013.1.S1_at

Description

gb:NM_184499.1
DB_XREF= gi:34896087
GEN=B1189A09.29
TID=Os.46013.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46013 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1189A09.29 (B1189A09.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) B1189A09.29 (B1189A09.29), mRNA.
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os01g07040	8/11	Pollen proteins Ole e I family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os01g06950	NA	NA	1	+	3286535..3286999	hypothetical protein
LOC_Os01g06960	OsAffx.23143.1.S1_x_at	9/11	1	+	3287563..3288343	Pollen proteins Ole e I family protein
LOC_Os01g06960	OsAffx.23143.4.S1_s_at	2/11	1	+	3287563..3288343	Pollen proteins Ole e I family protein
LOC_Os01g06960	OsAffx.23143.3.S1_x_at	1/11	1	+	3287563..3288343	Pollen proteins Ole e I family protein
LOC_Os01g06970	NA	NA	1	+	3289787..3290291	hypothetical protein
LOC_Os01g06980	OsAffx.23143.3.S1_x_at	11/11	1	+	3291426..3292014	pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g06980	OsAffx.23143.3.S1_at	11/11	1	+	3291426..3292014	pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g06980	OsAffx.23143.1.S1_x_at	3/11	1	+	3291426..3292014	pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g06980	OsAffx.23143.4.S1_s_at	1/11	1	+	3291426..3292014	pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g06990	OsAffx.23143.4.S1_s_at	2/11	1	+	3294652..3295212	Pollen proteins Ole e I family protein
LOC_Os01g06990	OsAffx.23143.3.S1_x_at	2/11	1	+	3294652..3295212	Pollen proteins Ole e I family protein
LOC_Os01g06990	OsAffx.23143.1.S1_x_at	1/11	1	+	3294652..3295212	Pollen proteins Ole e I family protein
LOC_Os01g07000	OsAffx.23143.4.S1_s_at	11/11	1	+	3297244..3297812	pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g07000	OsAffx.23143.1.S1_x_at	2/11	1	+	3297244..3297812	pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g07010	OsAffx.23143.1.S1_x_at	11/11	1	+	3300325..3300894	Pollen proteins Ole e I family protein
LOC_Os01g07010	OsAffx.23143.4.S1_s_at	2/11	1	+	3300325..3300894	Pollen proteins Ole e I family protein
LOC_Os01g07010	OsAffx.23143.3.S1_x_at	1/11	1	+	3300325..3300894	Pollen proteins Ole e I family protein
LOC_Os01g07020	OsAffx.23143.1.S1_x_at	6/11	1	+	3303121..3303696	Pollen proteins Ole e I family protein
LOC_Os01g07020	OsAffx.23143.3.S1_x_at	2/11	1	+	3303121..3303696	Pollen proteins Ole e I family protein
LOC_Os01g07020	OsAffx.23143.4.S1_s_at	2/11	1	+	3303121..3303696	Pollen proteins Ole e I family protein
LOC_Os01g07030	OsAffx.10948.1.S1_at	11/11	1	+	3309264..3310075	Pollen proteins Ole e I family protein, expressed
LOC_Os01g07030	OsAffx.23143.1.S1_x_at	1/11	1	+	3309264..3310075	Pollen proteins Ole e I family protein, expressed
LOC_Os01g07040	Os.46013.1.S1_at	8/11	1	+	3311804..3312411	Pollen proteins Ole e I family protein, expressed
LOC_Os01g07040	OsAffx.23143.1.S1_x_at	1/11	1	+	3311804..3312411	Pollen proteins Ole e I family protein, expressed
LOC_Os01g07050	OsAffx.23143.1.S1_x_at	1/11	1	+	3314356..3314913	Pollen proteins Ole e I family protein, expressed
LOC_Os01g07060	OsAffx.10949.1.S1_x_at	11/11	1	+	3317253..3317837	Pollen proteins Ole e I family protein
LOC_Os01g07070	Os.45300.1.A1_at	11/11	1	+	3319592..3325053	transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g07070	Os.8829.1.S1_at	11/11	1	+	3319592..3325053	transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g07080	Os.32557.1.S1_s_at	11/11	1	+	3325340..3328765	DEAD/DEAH box helicase, putative, expressed
LOC_Os01g07080	Os.32557.1.S1_at	9/11	1	+	3325340..3328765	DEAD/DEAH box helicase, putative, expressed
LOC_Os01g07090	Os.5408.1.S1_at	11/11	1	+	3329754..3332837	Senescence-associated protein, putative, expressed
LOC_Os01g07100	Os.21141.1.S1_at	4/11	1	+	3333210..3339688	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.46013.1.S1_at--550--365	1	NONE	CTTCAATCGAGCACCAAGCAAGCTC	NONE
Os.46013.1.S1_at--547--273	1	NONE	AAGCAAGCTCCGAGCAATGGCTGCC	NONE
Os.46013.1.S1_at--326--517	1	NONE	GCAAGCTCCGAGCAATGGCTGCCTT	NONE
Os.46013.1.S1_at--310--149	1	Chr01:3312347..3312371 (25 bp)	AGCAATGGCTGCCTTCCAGCTTCCT	LOC_Os01g07040
Os.46013.1.S1_at--1100--35	1	Chr01:3311914..3311938 (25 bp)	ATCAATTACTCCAGCATCGAGGGCG	LOC_Os01g07040
Os.46013.1.S1_at--321--415	1	Chr01:3311891..3311915 (25 bp)	CGCGTCGCTCCGTGATGAGGGCAAA	LOC_Os01g07040
Os.46013.1.S1_at--1147--933	1	Chr01:3311887..3311911 (25 bp)	TCGCTCCGTGATGAGGGCAAACGGT	LOC_Os01g07040
Os.46013.1.S1_at--542--327	1	Chr01:3311870..3311894 (25 bp)	CAAACGGTGGACTGGCGAGGGCTAC	LOC_Os01g07040
Os.46013.1.S1_at--1104--757	1	Chr01:3311852..3311876 (25 bp)	GGGCTACGATAACGTCATGTATGCC	LOC_Os01g07040
Os.46013.1.S1_at--48--647	1	Chr01:3311845..3311869 (25 bp)	GATAACGTCATGTATGCCGCTGGCC	LOC_Os01g07040
Os.46013.1.S1_at--335--981	1	Chr01:3311843..3311867 (25 bp)	TAACGTCATGTATGCCGCTGGCCCG	LOC_Os01g07040

Target Sequence

CTTCAATCGAGCACCAAGCAAGCTCCGAGCAATGGCTGCCTTCCAGCTTCCTCTCGCGATCCTCGTGTCCCTCCTNGCCG
NCGGCGCCACTGCNAACAANGGCTACACNACACCATCACCGCCGCCGCCGCNNNAGCAGCAGTACACCCCGCCGCCGCCG
GCCCACAGTGACAAGTTGCTGGTGAGGGTGGAGGGCATGGTGTACTGCCAGAGCTGCGNGTACCGGNNAACACGCATAGC
CTCAACGGCGCGATGCCGCTGCCCAAGGCGGAGGTGTCNGTTACCTGCCACGACGNCAAGAATCNTGTCATGGAGTNCAA
GCGGGCNATCGCCGACGAGAGCGGCTACTTCCAGACGGAGCTCGGCGTGACNAAAGTCTCTGACTTCTTNATGGGNGATC
CGAGCAAGGCATGCCACGTGCGACTTCAGGCGTCGCCGGAGTTCAAGTGCAACAACCCCACAAACATCAATTACTCCAGC
ATCGAGGGCGCGTCGCTCCGTGATGAGGGCAAACGGTGGACTGGCGAGGGCTACGATAACGTCATGTATGCCGCTGGCCC
G

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis