Browse Element(s) Details


OsAffx.10949.1.S1_x_at

Description tigr:9629.m00635
TID=OsAffx.10949.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Pollen proteins Ole e I family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0706011/11Pollen proteins Ole e I family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06990OsAffx.23143.4.S1_s_at2/111+3294652..3295212Pollen proteins Ole e I family protein
LOC_Os01g06990OsAffx.23143.3.S1_x_at2/111+3294652..3295212Pollen proteins Ole e I family protein
LOC_Os01g06990OsAffx.23143.1.S1_x_at1/111+3294652..3295212Pollen proteins Ole e I family protein
LOC_Os01g07000OsAffx.23143.4.S1_s_at11/111+3297244..3297812pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g07000OsAffx.23143.1.S1_x_at2/111+3297244..3297812pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g07010OsAffx.23143.1.S1_x_at11/111+3300325..3300894Pollen proteins Ole e I family protein
LOC_Os01g07010OsAffx.23143.4.S1_s_at2/111+3300325..3300894Pollen proteins Ole e I family protein
LOC_Os01g07010OsAffx.23143.3.S1_x_at1/111+3300325..3300894Pollen proteins Ole e I family protein
LOC_Os01g07020OsAffx.23143.1.S1_x_at6/111+3303121..3303696Pollen proteins Ole e I family protein
LOC_Os01g07020OsAffx.23143.3.S1_x_at2/111+3303121..3303696Pollen proteins Ole e I family protein
LOC_Os01g07020OsAffx.23143.4.S1_s_at2/111+3303121..3303696Pollen proteins Ole e I family protein
LOC_Os01g07030OsAffx.10948.1.S1_at11/111+3309264..3310075Pollen proteins Ole e I family protein, expressed
LOC_Os01g07030OsAffx.23143.1.S1_x_at1/111+3309264..3310075Pollen proteins Ole e I family protein, expressed
LOC_Os01g07040Os.46013.1.S1_at8/111+3311804..3312411Pollen proteins Ole e I family protein, expressed
LOC_Os01g07040OsAffx.23143.1.S1_x_at1/111+3311804..3312411Pollen proteins Ole e I family protein, expressed
LOC_Os01g07050OsAffx.23143.1.S1_x_at1/111+3314356..3314913Pollen proteins Ole e I family protein, expressed
LOC_Os01g07060OsAffx.10949.1.S1_x_at11/111+3317253..3317837Pollen proteins Ole e I family protein
LOC_Os01g07070Os.45300.1.A1_at11/111+3319592..3325053transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g07070Os.8829.1.S1_at11/111+3319592..3325053transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g07080Os.32557.1.S1_s_at11/111+3325340..3328765DEAD/DEAH box helicase, putative, expressed
LOC_Os01g07080Os.32557.1.S1_at9/111+3325340..3328765DEAD/DEAH box helicase, putative, expressed
LOC_Os01g07090Os.5408.1.S1_at11/111+3329754..3332837Senescence-associated protein, putative, expressed
LOC_Os01g07100Os.21141.1.S1_at4/111+3333210..3339688hypothetical protein
LOC_Os01g07110Os.51871.1.S1_at11/111+3342005..3351851BRCA2 repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10949.1.S1_x_at--202--1631Chr01:3317676..3317700 (25 bp)
AGCGGCGCACCAAAGCAGCGACAAG
LOC_Os01g07060
OsAffx.10949.1.S1_x_at--441--3291Chr01:3317666..3317690 (25 bp)
CAAAGCAGCGACAAGGTGCTAGTGA
LOC_Os01g07060
OsAffx.10949.1.S1_x_at--571--1371Chr01:3317617..3317641 (25 bp)
AGAGCTGCGAGCACCGCAACTCGTG
LOC_Os01g07060
OsAffx.10949.1.S1_x_at--1130--4111Chr01:3317603..3317627 (25 bp)
CGCAACTCGTGGAGCCTCGACGGCG
LOC_Os01g07060
OsAffx.10949.1.S1_x_at--51--8011Chr01:3317559..3317583 (25 bp)
GGAGGTGTCGGTCACCTGCCGCGAC
LOC_Os01g07060
OsAffx.10949.1.S1_x_at--841--1371Chr01:3317491..3317515 (25 bp)
AGAGCGGCTACTTCCTCGCGGAGTT
LOC_Os01g07060
OsAffx.10949.1.S1_x_at--756--9871Chr01:3317483..3317507 (25 bp)
TACTTCCTCGCGGAGTTCGGCGTCA
LOC_Os01g07060
OsAffx.10949.1.S1_x_at--481--10611Chr01:3317468..3317492 (25 bp)
TTCGGCGTCACCAGGGCGTCCGACT
LOC_Os01g07060
OsAffx.10949.1.S1_x_at--743--8711Chr01:3317401..3317425 (25 bp)
TGTCGTCGCCGGACCGCAAGTGCGA
LOC_Os01g07060
OsAffx.10949.1.S1_x_at--834--2851Chr01:3317384..3317408 (25 bp)
AAGTGCGACGGCCTCACCAACATCA
LOC_Os01g07060
OsAffx.10949.1.S1_x_at--262--8111Chr01:3317308..3317332 (25 bp)
GGCAGGGCTACGACAACGTCGTCTA
LOC_Os01g07060
Target Sequence 
AGCGGCGCACCAAAGCAGCGACAAGGTGCTAGTGAGGGTGGAGGGGAAGGTGTACTGCCAGAGCTGCGAGCACCGCAACT
CGTGGAGCCTCGACGGCGCGAGGCCGCTGCGCGGGGCGGAGGTGTCGGTCACCTGCCGCGACGCCAAGAACCGGGCGGCG
TGGTGGAGGCTGGCCGTCGCCGACGAGAGCGGCTACTTCCTCGCGGAGTTCGGCGTCACCAGGGCGTCCGACTTCCTCGG
CGCCGACCCGCGGGGGGCGTGCTACGCGCGGCTGCTGTCGTCGCCGGACCGCAAGTGCGACGGCCTCACCAACATCAACG
CCGGCATGGTGGGCGCGCCGCTCCGCGACGAGGGCAAGCGGTGGCCGGGGCAGGGCTACGACAACGTCGTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10949.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis