Browse Element(s) Details


Os.8829.1.S1_at

Description gb:AK061428.1
DB_XREF= gi:32971446
TID=Os.8829.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8829 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1189A09.32 (B1189A09.32), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-306-H02, full insert sequence.
FL= gb:AK061428.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0707011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06990OsAffx.23143.4.S1_s_at2/111+3294652..3295212Pollen proteins Ole e I family protein
LOC_Os01g06990OsAffx.23143.3.S1_x_at2/111+3294652..3295212Pollen proteins Ole e I family protein
LOC_Os01g06990OsAffx.23143.1.S1_x_at1/111+3294652..3295212Pollen proteins Ole e I family protein
LOC_Os01g07000OsAffx.23143.4.S1_s_at11/111+3297244..3297812pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g07000OsAffx.23143.1.S1_x_at2/111+3297244..3297812pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g07010OsAffx.23143.1.S1_x_at11/111+3300325..3300894Pollen proteins Ole e I family protein
LOC_Os01g07010OsAffx.23143.4.S1_s_at2/111+3300325..3300894Pollen proteins Ole e I family protein
LOC_Os01g07010OsAffx.23143.3.S1_x_at1/111+3300325..3300894Pollen proteins Ole e I family protein
LOC_Os01g07020OsAffx.23143.1.S1_x_at6/111+3303121..3303696Pollen proteins Ole e I family protein
LOC_Os01g07020OsAffx.23143.3.S1_x_at2/111+3303121..3303696Pollen proteins Ole e I family protein
LOC_Os01g07020OsAffx.23143.4.S1_s_at2/111+3303121..3303696Pollen proteins Ole e I family protein
LOC_Os01g07030OsAffx.10948.1.S1_at11/111+3309264..3310075Pollen proteins Ole e I family protein, expressed
LOC_Os01g07030OsAffx.23143.1.S1_x_at1/111+3309264..3310075Pollen proteins Ole e I family protein, expressed
LOC_Os01g07040Os.46013.1.S1_at8/111+3311804..3312411Pollen proteins Ole e I family protein, expressed
LOC_Os01g07040OsAffx.23143.1.S1_x_at1/111+3311804..3312411Pollen proteins Ole e I family protein, expressed
LOC_Os01g07050OsAffx.23143.1.S1_x_at1/111+3314356..3314913Pollen proteins Ole e I family protein, expressed
LOC_Os01g07060OsAffx.10949.1.S1_x_at11/111+3317253..3317837Pollen proteins Ole e I family protein
LOC_Os01g07070Os.45300.1.A1_at11/111+3319592..3325053transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g07070Os.8829.1.S1_at11/111+3319592..3325053transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g07080Os.32557.1.S1_s_at11/111+3325340..3328765DEAD/DEAH box helicase, putative, expressed
LOC_Os01g07080Os.32557.1.S1_at9/111+3325340..3328765DEAD/DEAH box helicase, putative, expressed
LOC_Os01g07090Os.5408.1.S1_at11/111+3329754..3332837Senescence-associated protein, putative, expressed
LOC_Os01g07100Os.21141.1.S1_at4/111+3333210..3339688hypothetical protein
LOC_Os01g07110Os.51871.1.S1_at11/111+3342005..3351851BRCA2 repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8829.1.S1_at--9--7531Chr01:3322328..3322352 (25 bp)
GTGGCTACAAAGACCAGTGGCCCTG
LOC_Os01g07070
Os.8829.1.S1_at--263--7551Chr01:3322344..3322368 (25 bp)
GTGGCCCTGGAACATAAAGATCTAT
LOC_Os01g07070
Os.8829.1.S1_at--342--1291Chr01:3322395..3322419 (25 bp)
AGATGCCTGCCTTGCCTATGAAGAT
LOC_Os01g07070
Os.8829.1.S1_at--204--10131Chr01:3322411..3322435 (25 bp)
TATGAAGATCCTTCTGCTGCTCATT
LOC_Os01g07070
Os.8829.1.S1_at--794--9071Chr01:3322428..3322452 (25 bp)
TGCTCATTCAGCTGGTGGATTCTAT
LOC_Os01g07070
Os.8829.1.S1_at--250--1591Chr01:3322591..3322615 (25 bp)
AGCTCCTAGAGCTCCTGCATATGGT
LOC_Os01g07070
Os.8829.1.S1_at--17--6131Chr01:3323651..3323675 (25 bp)
GAGGTCGCAGGGATAACTTCAGAGA
LOC_Os01g07070
Os.8829.1.S1_at--364--5891Chr01:3323818..3323842 (25 bp)
GAGCGTAAGGTAGGTTGCCTGCTTT
LOC_Os01g07070
Os.8829.1.S1_at--514--6691Chr01:3323831..3323855 (25 bp)
GTTGCCTGCTTTTCTCGGAATTATA
LOC_Os01g07070
Os.8829.1.S1_at--128--1991Chr01:3323868..3323892 (25 bp)
ACTCCAATGTTGGTCGGATGTTTGT
LOC_Os01g07070
Os.8829.1.S1_at--97--6291Chr01:3323884..3323908 (25 bp)
GATGTTTGTTTGTCTCATCCAAAAA
LOC_Os01g07070
Target Sequence 
GTGGCTACAAAGACCAGTGGCCCTGGAACATAAAGATCTATACTGATGACTCTGGAAAGAATAAAGGAGATGCCTGCCTT
GCCTATGAAGATCCTTCTGCTGCTCATTCAGCTGGTGGATTCTATAACAATTATGAAATGAGAGGCTATAAAATTAGTGT
NGCGATGGCTGAGAAATCAGCTCCTAGAGCTCCTGCATATGGTCATGGAGGTGGACGTGGTGGCTATGGTGGAGGTCGCA
GGGATAACTTCAGAGATGGAGGAGGCCATGGGCCTAACAGGCATCAAGGTGGTGGTTCNCGTTCAAGGCCATACTGAAAG
CAACTAATATAGTTACTAAGATTGTCATCTGTGAGAAACCATTTCTATTCCTGTNCATCGGACTTGTACTCAAAACAAGA
GCGTAAGGTAGGTTGCCTGCTTTTCTCGGAATTATATTCCATTGTCATACTCCAATGTTGGTCGGATGTTTGTTTGTCTC
ATCCAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8829.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis