Browse Element(s) Details


Os.45300.1.A1_at

Description gb:CB664901
DB_XREF= gi:29668626
DB_XREF=OSJNEd10O09.r
CLONE=OSJNEd10O09
TID=Os.45300.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.45300 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1189A09.33 (B1189A09.33), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0707011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06990OsAffx.23143.4.S1_s_at2/111+3294652..3295212Pollen proteins Ole e I family protein
LOC_Os01g06990OsAffx.23143.3.S1_x_at2/111+3294652..3295212Pollen proteins Ole e I family protein
LOC_Os01g06990OsAffx.23143.1.S1_x_at1/111+3294652..3295212Pollen proteins Ole e I family protein
LOC_Os01g07000OsAffx.23143.4.S1_s_at11/111+3297244..3297812pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g07000OsAffx.23143.1.S1_x_at2/111+3297244..3297812pollen Ole e 1 allergen and extensin family protein, putative
LOC_Os01g07010OsAffx.23143.1.S1_x_at11/111+3300325..3300894Pollen proteins Ole e I family protein
LOC_Os01g07010OsAffx.23143.4.S1_s_at2/111+3300325..3300894Pollen proteins Ole e I family protein
LOC_Os01g07010OsAffx.23143.3.S1_x_at1/111+3300325..3300894Pollen proteins Ole e I family protein
LOC_Os01g07020OsAffx.23143.1.S1_x_at6/111+3303121..3303696Pollen proteins Ole e I family protein
LOC_Os01g07020OsAffx.23143.3.S1_x_at2/111+3303121..3303696Pollen proteins Ole e I family protein
LOC_Os01g07020OsAffx.23143.4.S1_s_at2/111+3303121..3303696Pollen proteins Ole e I family protein
LOC_Os01g07030OsAffx.10948.1.S1_at11/111+3309264..3310075Pollen proteins Ole e I family protein, expressed
LOC_Os01g07030OsAffx.23143.1.S1_x_at1/111+3309264..3310075Pollen proteins Ole e I family protein, expressed
LOC_Os01g07040Os.46013.1.S1_at8/111+3311804..3312411Pollen proteins Ole e I family protein, expressed
LOC_Os01g07040OsAffx.23143.1.S1_x_at1/111+3311804..3312411Pollen proteins Ole e I family protein, expressed
LOC_Os01g07050OsAffx.23143.1.S1_x_at1/111+3314356..3314913Pollen proteins Ole e I family protein, expressed
LOC_Os01g07060OsAffx.10949.1.S1_x_at11/111+3317253..3317837Pollen proteins Ole e I family protein
LOC_Os01g07070Os.45300.1.A1_at11/111+3319592..3325053transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g07070Os.8829.1.S1_at11/111+3319592..3325053transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g07080Os.32557.1.S1_s_at11/111+3325340..3328765DEAD/DEAH box helicase, putative, expressed
LOC_Os01g07080Os.32557.1.S1_at9/111+3325340..3328765DEAD/DEAH box helicase, putative, expressed
LOC_Os01g07090Os.5408.1.S1_at11/111+3329754..3332837Senescence-associated protein, putative, expressed
LOC_Os01g07100Os.21141.1.S1_at4/111+3333210..3339688hypothetical protein
LOC_Os01g07110Os.51871.1.S1_at11/111+3342005..3351851BRCA2 repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45300.1.A1_at--314--4871Chr01:3324075..3324099 (25 bp)
GCTATAACGCTTACATTCCACATGG
LOC_Os01g07070
Os.45300.1.A1_at--123--3511Chr01:3324095..3324119 (25 bp)
CATGGTAACTCAGCCGGTGGATCAC
LOC_Os01g07070
Os.45300.1.A1_at--680--31Chr01:3324603..3324627 (25 bp)
ATTGTGAAACCTCGAAGCCATCCTT
LOC_Os01g07070
Os.45300.1.A1_at--613--4351Chr01:3324645..3324669 (25 bp)
CCAGTTCCTTGTGCTGATTGGCAAA
LOC_Os01g07070
Os.45300.1.A1_at--975--10751Chr01:3324670..3324694 (25 bp)
TTGACCTGTTGGCTGGATACCTCCA
LOC_Os01g07070
Os.45300.1.A1_at--408--7091Chr01:3324721..3324745 (25 bp)
GTCACAGTTGCGGTGGATACCTCCA
LOC_Os01g07070
Os.45300.1.A1_at--960--10011Chr01:3324791..3324815 (25 bp)
TAGACGTCAGGCTTCTTTCCGTTGA
LOC_Os01g07070
Os.45300.1.A1_at--150--10231Chr01:3324806..3324830 (25 bp)
TTTCCGTTGATTGCTTTTTCCGACT
LOC_Os01g07070
Os.45300.1.A1_at--308--9291Chr01:3324824..3324848 (25 bp)
TCCGACTCTTTCATTTCTTTCTGAA
LOC_Os01g07070
Os.45300.1.A1_at--394--8851Chr01:3324903..3324927 (25 bp)
TGATCTGGAGCCCTGGACTTGCAGA
LOC_Os01g07070
Os.45300.1.A1_at--132--10251Chr01:3324958..3324982 (25 bp)
TTTGTTTGACATTTACGTGCCGTAT
LOC_Os01g07070
Target Sequence 
GCTATAACGCTTACATTCCACATGGTAACTCAGCCGGTGGATCACTAGCTTGGATTTTGGCGAGGAGAAACAGGCTTGCT
GCTGTACAATGTGTGCAGCCAACACCGTCTGCTGCACATCGATGCTGCCTGCTCTTCTATCACTGCAGCGTATTGTGAAA
CCTCGAAGCCATCCTTGTATCTGCCCTCCGGATCCAGTTCCTTGTGCTGATTGGCAAATTGACCTGTTGGCTGGATACCT
CCAGTTCATCTGGTTTCTTTGTATGGTTTGTCACAGTTGCGGTGGATACCTCCAGTTCATCTGGTTTCTTTGTATGGTTT
CTATCACAGTTGCGGAAGATAGACGTCAGGCTTCTTTCCGTTGATTGCTTTTTCCGACTCTTTCATTTCTTTCTGAAGTT
TCTCCTCGCTGTTCCATATGGGTTTGGTATTTGGATCTGTTTTAGGAGGCTTGATCTGGAGCCCTGGACTTGCAGATGGG
CGAAGCTCCAAGCCGTTCACGTCGTTTTTGTTTGACATTTACGTGCCGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45300.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis