Browse Element(s) Details


Os.32557.1.S1_at

Description gb:AK068747.1
DB_XREF= gi:32978770
TID=Os.32557.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.32557 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative RNA helicase (B1189A09.34), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013162N07, full insert sequence.
FL= gb:AK068747.1 gb:AK103737.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g070809/11DEAD/DEAH box helicase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07010OsAffx.23143.1.S1_x_at11/111+3300325..3300894Pollen proteins Ole e I family protein
LOC_Os01g07010OsAffx.23143.4.S1_s_at2/111+3300325..3300894Pollen proteins Ole e I family protein
LOC_Os01g07010OsAffx.23143.3.S1_x_at1/111+3300325..3300894Pollen proteins Ole e I family protein
LOC_Os01g07020OsAffx.23143.1.S1_x_at6/111+3303121..3303696Pollen proteins Ole e I family protein
LOC_Os01g07020OsAffx.23143.3.S1_x_at2/111+3303121..3303696Pollen proteins Ole e I family protein
LOC_Os01g07020OsAffx.23143.4.S1_s_at2/111+3303121..3303696Pollen proteins Ole e I family protein
LOC_Os01g07030OsAffx.10948.1.S1_at11/111+3309264..3310075Pollen proteins Ole e I family protein, expressed
LOC_Os01g07030OsAffx.23143.1.S1_x_at1/111+3309264..3310075Pollen proteins Ole e I family protein, expressed
LOC_Os01g07040Os.46013.1.S1_at8/111+3311804..3312411Pollen proteins Ole e I family protein, expressed
LOC_Os01g07040OsAffx.23143.1.S1_x_at1/111+3311804..3312411Pollen proteins Ole e I family protein, expressed
LOC_Os01g07050OsAffx.23143.1.S1_x_at1/111+3314356..3314913Pollen proteins Ole e I family protein, expressed
LOC_Os01g07060OsAffx.10949.1.S1_x_at11/111+3317253..3317837Pollen proteins Ole e I family protein
LOC_Os01g07070Os.45300.1.A1_at11/111+3319592..3325053transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g07070Os.8829.1.S1_at11/111+3319592..3325053transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g07080Os.32557.1.S1_s_at11/111+3325340..3328765DEAD/DEAH box helicase, putative, expressed
LOC_Os01g07080Os.32557.1.S1_at9/111+3325340..3328765DEAD/DEAH box helicase, putative, expressed
LOC_Os01g07090Os.5408.1.S1_at11/111+3329754..3332837Senescence-associated protein, putative, expressed
LOC_Os01g07100Os.21141.1.S1_at4/111+3333210..3339688hypothetical protein
LOC_Os01g07110Os.51871.1.S1_at11/111+3342005..3351851BRCA2 repeat family protein, expressed
LOC_Os01g07120Os.21563.1.S1_a_at11/111+3353185..3358006AP2 domain containing protein, expressed
LOC_Os01g07120Os.21563.1.S2_at11/111+3353185..3358006AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32557.1.S1_at--748--5031Chr01:3325876..3325900 (25 bp)
GCAGAAGAACTAGCTCTAAGGCCAG
LOC_Os01g07080
Os.32557.1.S1_at--919--5471Chr01:3325870..3325894 (25 bp)
GAACTAGCTCTAAGGCCAGAGATAG
LOC_Os01g07080
Os.32557.1.S1_at--641--1031Chr01:3325593..3325617 (25 bp)
AGGTGCTCAAGAAAATCAAGCAGAA
LOC_Os01g07080
Os.32557.1.S1_at--225--4051Chr01:3325419..3325443 (25 bp)
CGATTTTGTGATTTGTGACAAGGAC
LOC_Os01g07080
Os.32557.1.S1_at--746--2211Chr01:3325402..3325426 (25 bp)
ACAAGGACGGTGAATGAGCATGAGC
LOC_Os01g07080
Os.32557.1.S1_at--259--8911Chr01:3325388..3325412 (25 bp)
TGAGCATGAGCATCATTCATAGAAG
LOC_Os01g07080
Os.32557.1.S1_at--855--6491Chr01:3325364..3325388 (25 bp)
GATAGTGCCATCTCTATTTTTCGTC
LOC_Os01g07080
Os.32557.1.S1_at--127--7291Chr01:3325360..3325384 (25 bp)
GTGCCATCTCTATTTTTCGTCAGTT
LOC_Os01g07080
Os.32557.1.S1_at--836--4431Chr01:3325358..3325382 (25 bp)
GCCATCTCTATTTTTCGTCAGTTAA
LOC_Os01g07080
Os.32557.1.S1_at--771--171NONE
ATTTTTCGTCAGTTAAAGACAGCTG
NONE
Os.32557.1.S1_at--598--6751NONE
GTTAAAGACAGCTGAATCACTGTAA
NONE
Target Sequence 
GCAGAAGAACTAGCTCTAAGGCCAGAGATAGAGAAGAGGAGGAAAGCCCCGGAGAAGCCTGAAAAGCCAAAGCGGAAGAA
GACAGGTAAACAGCGTCAAGCAGTCCAAACCAAGGAGGACATGGATGAGCTCGCGAATGAGTACCGGCTCCTGAAGAAGC
TGAAGCGGGGGGTGATCGACGAGGACGAGTACGAGAAGCTCACCGGATTCGGGGAATCTGACGATGACGATTCCTCGGAT
GGCGGCGATTCTGACCTGGACGAGAGAAAGGAGAGGGGCAACAAGGTGCTCAAGAAAATCAAGCAGAAAGGGAAGGCAAA
AGGGTCTAGGAGATTTGAAGGGAGGAGCAAACAGAAGACTAGGAGAAGATGAAAAGTATATCTTGTTCTTAGCAATTTTG
CTTTTTTTTTTCTTTAACCAGTGTAGGTTGCAAGTTTTGCCCTGGCTATTGTATGTTCGATTTTGTGATTTGTGACAAGG
ACGGTGAATGAGCATGAGCATCATTCATAGAAGATAGTGCCATCTCTATTTTTCGTCAGTTAAAGACAGCTGAATCACTG
TAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32557.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis