Browse Element(s) Details


Os.21563.1.S1_a_at

Description gb:AF300971.1
DB_XREF= gi:22594970
TID=Os.21563.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.21563 (NCBI UniGene Cluster)
DEF=Oryza sativa DRE binding protein 2 mRNA, complete cds.
PROD=DRE binding protein 2
FL= gb:AF300971.1 gb:AK067313.1 gb:AK121956.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0712011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07080Os.32557.1.S1_s_at11/111+3325340..3328765DEAD/DEAH box helicase, putative, expressed
LOC_Os01g07080Os.32557.1.S1_at9/111+3325340..3328765DEAD/DEAH box helicase, putative, expressed
LOC_Os01g07090Os.5408.1.S1_at11/111+3329754..3332837Senescence-associated protein, putative, expressed
LOC_Os01g07100Os.21141.1.S1_at4/111+3333210..3339688hypothetical protein
LOC_Os01g07110Os.51871.1.S1_at11/111+3342005..3351851BRCA2 repeat family protein, expressed
LOC_Os01g07120Os.21563.1.S1_a_at11/111+3353185..3358006AP2 domain containing protein, expressed
LOC_Os01g07120Os.21563.1.S2_at11/111+3353185..3358006AP2 domain containing protein, expressed
LOC_Os01g07130Os.32760.1.S1_at11/111+3355336..3357462expressed protein
LOC_Os01g07140Os.7217.1.S1_a_at11/111+3358811..3364460Kelch motif family protein, expressed
LOC_Os01g07150Os.8693.1.S1_x_at11/111+3373395..3374007expressed protein
LOC_Os01g07150Os.55406.1.S1_x_at1/111+3373395..3374007expressed protein
LOC_Os01g07160OsAffx.22760.2.S1_at11/111+3377529..3378860F-box domain containing protein
LOC_Os01g07160OsAffx.22760.2.S1_s_at11/111+3377529..3378860F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009414biological_processresponse to water deprivation
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21563.1.S1_a_at--58--8871Chr01:3354642..3354666 (25 bp)
TGATGATGTCTAATGGGCCGGCCAC
LOC_Os01g07120
Os.21563.1.S1_a_at--162--3931Chr01:3354660..3354684 (25 bp)
CGGCCACTATACCTTCTGATGAGAA
LOC_Os01g07120
Os.21563.1.S1_a_at--297--991Chr01:3354684..3354708 (25 bp)
AGGATGAGCTGGAATCTCCTCCTTT
LOC_Os01g07120
Os.21563.1.S1_a_at--119--9271Chr01:3354700..3354724 (25 bp)
TCCTCCTTTCATCGTGGCTAATGGG
LOC_Os01g07120
Os.21563.1.S1_a_at--504--771Chr01:3354756..3354780 (25 bp)
ATGTGTTGGAACGTGTAGTCCCTGA
LOC_Os01g07120
Os.21563.1.S1_a_at--680--1911Chr01:3354766..3354790 (25 bp)
ACGTGTAGTCCCTGAGGTGCAGGAT
LOC_Os01g07120
Os.21563.1.S1_a_at--71--7651Chr01:3354803..3354827 (25 bp)
GGGAGCAATGGCTTGAAACGTGTTT
LOC_Os01g07120
Os.21563.1.S1_a_at--271--8931Chr01:3354816..3354840 (25 bp)
TGAAACGTGTTTGTCAGGAGCGGAA
LOC_Os01g07120
Os.21563.1.S1_a_at--869--391Chr01:3354859..3354883 (25 bp)
ATCAGAAGGGATCGTTTTACACAAA
LOC_Os01g07120
Os.21563.1.S1_a_at--331--1131Chr01:3354950..3354974 (25 bp)
AGTGCTGATCAGAAAACGGAAGTAC
LOC_Os01g07120
Os.21563.1.S1_a_at--1071--691Chr01:3354996..3355020 (25 bp)
ATGATGGGTTTAGCCTTTTCTCCTA
LOC_Os01g07120
Target Sequence 
TGATGATGTCTAATGGGCCGGCCACTATACCTTCTGATGAGAAGGATGAGCTGGAATCTCCTCCTTTCATCGTGGCTAAT
GGGCCANGCTGTGTTGTATCAGCCTGATAAGAAGGATGTGTTGGAACGTGTAGTCCCTGAGGTGCAGGATGTTAAAACAG
AAGGGAGCAATGGCTTGAAACGTGTTTGTCAGGAGCGGAAGANTATGGAGGTATGTGAATCAGAAGGGATCGTTTTACAC
AAAGAAGTGAACATAAGTTATGATTATTTCAATGTCCATGAAGTTGTTGAGATGATAATTGTTGAATTAAGTGCTGATCA
GAAAACGGAAGTACATGAAGAGTACCAAGAGGGAGATGATGGGTTTAGCCTTTTCTCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21563.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis