Browse Element(s) Details


Os.55406.1.S1_x_at

Description gb:AK108022.1
DB_XREF= gi:32993231
TID=Os.55406.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55406 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-136-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-136-A04, full insert sequence.
FL= gb:AK108022.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g071501/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07110Os.51871.1.S1_at11/111+3342005..3351851BRCA2 repeat family protein, expressed
LOC_Os01g07120Os.21563.1.S1_a_at11/111+3353185..3358006AP2 domain containing protein, expressed
LOC_Os01g07120Os.21563.1.S2_at11/111+3353185..3358006AP2 domain containing protein, expressed
LOC_Os01g07130Os.32760.1.S1_at11/111+3355336..3357462expressed protein
LOC_Os01g07140Os.7217.1.S1_a_at11/111+3358811..3364460Kelch motif family protein, expressed
LOC_Os01g07150Os.8693.1.S1_x_at11/111+3373395..3374007expressed protein
LOC_Os01g07150Os.55406.1.S1_x_at1/111+3373395..3374007expressed protein
LOC_Os01g07160OsAffx.22760.2.S1_at11/111+3377529..3378860F-box domain containing protein
LOC_Os01g07160OsAffx.22760.2.S1_s_at11/111+3377529..3378860F-box domain containing protein
LOC_Os01g07170Os.14483.1.S1_x_at9/111+3383709..3387558HORMA domain containing protein, expressed
LOC_Os01g07170Os.46162.1.S1_at2/111+3383709..3387558HORMA domain containing protein, expressed
LOC_Os01g07180OsAffx.28142.2.S1_s_at11/111+3388559..3389813hypothetical protein
LOC_Os01g07190OsAffx.29435.1.S1_at9/111+3392564..3393112hypothetical protein
LOC_Os01g07200Os.32568.1.S1_at11/111+3394159..3397306nuclease, putative, expressed
LOC_Os01g07212OsAffx.23145.1.S1_s_at11/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07212Os.18398.1.S1_at11/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07212OsAffx.23145.1.S1_at10/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07212Os.20407.1.S1_at1/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55406.1.S1_x_at--1130--4971Chr04:31864431..31864455 (25 bp)
GCATCGACGCGTACGGCCGTGCTGT
NONE
Os.55406.1.S1_x_at--282--2651Chr04:31864487..31864511 (25 bp)
AACCACGTGCTTAGCCGGCAGTGCT
NONE
Os.55406.1.S1_x_at--778--4891Chr04:31864495..31864519 (25 bp)
GCTTAGCCGGCAGTGCTCGTCGCAG
NONE
Os.55406.1.S1_x_at--891--6252Chr04:31864528..31864552 (25 bp)
GATGGGCCGGATACACATCGTGTCG
NONE
Os.55406.1.S1_x_at--586--6473Chr11:18655168..18655192 (25 bp)
GATACACATCGTGTCGCCGGAGTCG
NONE
Os.55406.1.S1_x_at--955--1894Chr11:18655292..18655315 (24 bp)
ACGTCCGCAGCAAGTCGGAGGGCAA
NONE
Os.55406.1.S1_x_at--346--4253Chr11:18655322..18655345 (24 bp)
CCGTCGCCGATTGGTTGGGCAGCCA
NONE
Os.55406.1.S1_x_at--449--8891Chr04:31864749..31864773 (25 bp)
TGAGGGTGCAGAAGCAACACCACCA
NONE
Os.55406.1.S1_x_at--121--9431Chr04:31864832..31864856 (25 bp)
TCGTGCATCACTGAGGACCCCTGAG
NONE
Os.55406.1.S1_x_at--738--3331Chr04:31864840..31864864 (25 bp)
CACTGAGGACCCCTGAGCTTAGCTT
NONE
Os.55406.1.S1_x_at--253--9572Chr04:31864876..31864900 (25 bp)
TCTTCTCTTCTCTGAATTCATAGTG
NONE
Target Sequence 
GCATCGACGCGTACGGCCGTGCTGTGTCCGCCGGTGAGGTGCTGGCGGCGCACCCCAACCACGTGCTTAGCCGGCAGTGC
TCGTCGCAGCAGGGGGCGATGGGCCGGATACACATCGTGTCGCCGGAGTCGAAGCTGGAGTGCGGCGAGATCTACTTCCT
CATCCCGGCCGCCTCCGTCCCCGACGCCAAGAGAAGGACGAGCACCGGCGGCGCCGCAGGCCACGGGCACCACGTCCGCA
GCAAGTCGGAGGGCAACGCCGCCGTCGCCGATTGGTTGGGCAGCCAGTGCAGCGCGTCGCCGGAGACGACAAGGATGATG
AGGGTGCAGAAGCAACACCACCACCAACACCGGCGGCGCATGAGCACCGGGAGCCATGCCTCGCCGTGGCAGCCGCACCT
CTCGTGCATCACTGAGGACCCCTGAGCTTAGCTTTCATTTTTTTTTCTTCTCTTCTCTGAATTCATAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55406.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis