Browse Element(s) Details


Os.46162.1.S1_at

Description gb:AK119338.1
DB_XREF= gi:37988961
TID=Os.46162.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.46162 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-131-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-131-D04, full insert sequence.
FL= gb:AK119338.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g071702/11HORMA domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07140Os.7217.1.S1_a_at11/111+3358811..3364460Kelch motif family protein, expressed
LOC_Os01g07150Os.8693.1.S1_x_at11/111+3373395..3374007expressed protein
LOC_Os01g07150Os.55406.1.S1_x_at1/111+3373395..3374007expressed protein
LOC_Os01g07160OsAffx.22760.2.S1_at11/111+3377529..3378860F-box domain containing protein
LOC_Os01g07160OsAffx.22760.2.S1_s_at11/111+3377529..3378860F-box domain containing protein
LOC_Os01g07170Os.14483.1.S1_x_at9/111+3383709..3387558HORMA domain containing protein, expressed
LOC_Os01g07170Os.46162.1.S1_at2/111+3383709..3387558HORMA domain containing protein, expressed
LOC_Os01g07180OsAffx.28142.2.S1_s_at11/111+3388559..3389813hypothetical protein
LOC_Os01g07190OsAffx.29435.1.S1_at9/111+3392564..3393112hypothetical protein
LOC_Os01g07200Os.32568.1.S1_at11/111+3394159..3397306nuclease, putative, expressed
LOC_Os01g07212OsAffx.23145.1.S1_s_at11/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07212Os.18398.1.S1_at11/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07212OsAffx.23145.1.S1_at10/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07212Os.20407.1.S1_at1/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07224NANA1+3409051..3410420NA
LOC_Os01g07240Os.54072.1.S1_x_at11/111+3411667..3412767expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007129biological_processsynapsis
GO:0007130biological_processsynaptonemal complex formation
GO:0000794cellular_componentcondensed nuclear chromosome
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46162.1.S1_at--789--331Chr01:3383750..3383774 (25 bp)
ATACAGAAGTTGAAGCGTCCGCGGC
LOC_Os01g07170
Os.46162.1.S1_at--2--1471Chr01:3383746..3383770 (25 bp)
AGAAGTTGAAGCGTCCGCGGCAAGA
LOC_Os01g07170
Os.46162.1.S1_at--222--1271Chr01:3383622..3383646 (25 bp)
AGATTTGATGTGCTCTGTTGTTTCA
NONE
Os.46162.1.S1_at--248--6271Chr01:3383616..3383640 (25 bp)
GATGTGCTCTGTTGTTTCAACATTT
NONE
Os.46162.1.S1_at--1095--10471Chr01:3383591..3383615 (25 bp)
TTAAACCTCGTTCTTACAGATGATG
NONE
Os.46162.1.S1_at--985--10551Chr01:3383581..3383605 (25 bp)
TTCTTACAGATGATGGTTGCATGCT
NONE
Os.46162.1.S1_at--629--6671Chr01:3383566..3383590 (25 bp)
GTTGCATGCTAGTAATACCCAGGAA
NONE
Os.46162.1.S1_at--571--9071Chr01:3383539..3383563 (25 bp)
TGCTTTTTCCATTTGATTTACATTG
NONE
Os.46162.1.S1_at--960--10251Chr01:3383528..3383552 (25 bp)
TTTGATTTACATTGGCTCGCGTTAG
NONE
Os.46162.1.S1_at--115--4791Chr01:3383514..3383538 (25 bp)
GCTCGCGTTAGTATAGCCCTCAAAA
NONE
Os.46162.1.S1_at--644--6871Chr01:3383503..3383528 (25 bp)
GTATAGCCCTCAAAAAATCTAAGGA
NONE
Target Sequence 
ATACAGAAGTTGAAGCGTCCGCGGCAAGATGGATCCTCTCCATCTAGTAGGAAAAGGACTGCGTAAACTGGATAGATGTG
TTCATTTTGTCTTTTGTAAACATGAGAAGAATACCACCCNACANNNCNGAAGATTTGATGTGCTCTGTTGTTTCAACATT
TTTAAACCTCGTTCTTACAGATGATGGTTGCATGCTAGTAATACCCAGGAAAATGCTTTTTCCATTTGATTTACATTGGC
TCGCGTTAGTATAGCCCTCAAAAAATCTAAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46162.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis