Browse Element(s) Details


Os.32568.1.S1_at

Description gb:AK103697.1
DB_XREF= gi:32988906
TID=Os.32568.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32568 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative nuclease (P0701D05.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033136K04, full insert sequence.
FL= gb:AK103697.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0720011/11nuclease, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07150Os.8693.1.S1_x_at11/111+3373395..3374007expressed protein
LOC_Os01g07150Os.55406.1.S1_x_at1/111+3373395..3374007expressed protein
LOC_Os01g07160OsAffx.22760.2.S1_at11/111+3377529..3378860F-box domain containing protein
LOC_Os01g07160OsAffx.22760.2.S1_s_at11/111+3377529..3378860F-box domain containing protein
LOC_Os01g07170Os.14483.1.S1_x_at9/111+3383709..3387558HORMA domain containing protein, expressed
LOC_Os01g07170Os.46162.1.S1_at2/111+3383709..3387558HORMA domain containing protein, expressed
LOC_Os01g07180OsAffx.28142.2.S1_s_at11/111+3388559..3389813hypothetical protein
LOC_Os01g07190OsAffx.29435.1.S1_at9/111+3392564..3393112hypothetical protein
LOC_Os01g07200Os.32568.1.S1_at11/111+3394159..3397306nuclease, putative, expressed
LOC_Os01g07212OsAffx.23145.1.S1_s_at11/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07212Os.18398.1.S1_at11/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07212OsAffx.23145.1.S1_at10/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07212Os.20407.1.S1_at1/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07224NANA1+3409051..3410420NA
LOC_Os01g07240Os.54072.1.S1_x_at11/111+3411667..3412767expressed protein
LOC_Os01g07250Os.37707.2.S1_x_at11/111+3419175..3422288Saposin-like type B, region 1 family protein, expressed
LOC_Os01g07250Os.37707.1.S1_at11/111+3419175..3422288Saposin-like type B, region 1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004518molecular_functionnuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32568.1.S1_at--416--5871Chr01:3396245..3396269 (25 bp)
GAGCCTGAAGGTCTATGTGTATGAT
LOC_Os01g07200
Os.32568.1.S1_at--421--6351Chr01:3396286..3396310 (25 bp)
GATGCGTCGGAGATATCTACTGCGA
LOC_Os01g07200
Os.32568.1.S1_at--1093--6251Chr01:3396724..3396748 (25 bp)
GATGTGCATGGCACTATACTGCCTA
LOC_Os01g07200
Os.32568.1.S1_at--1144--5091Chr01:3396734..3396758 (25 bp)
GCACTATACTGCCTATGACCAACGA
LOC_Os01g07200
Os.32568.1.S1_at--401--10131Chr01:3396747..3396771 (25 bp)
TATGACCAACGACCAGAGCTGGCCA
LOC_Os01g07200
Os.32568.1.S1_at--55--1431Chr01:3396891..3396915 (25 bp)
AGAAACAGGCGCAATCTGGCAGGAA
LOC_Os01g07200
Os.32568.1.S1_at--782--8132Chr01:3396964..3396988 (25 bp)
GGACAAGCGCAATGGTACAGCATGA
LOC_Os01g07200
Os.32568.1.S1_at--1009--10311Chr01:3397033..3397057 (25 bp)
TTTCAGACTTGTAGCCCGGAGCAAT
LOC_Os01g07200
Os.32568.1.S1_at--982--5191Chr01:3397053..3397077 (25 bp)
GCAATATATGCTTTACACCACAGTA
LOC_Os01g07200
Os.32568.1.S1_at--1079--8731Chr01:3397098..3397122 (25 bp)
TGTACACTAGTACATCGGCAGAGGG
LOC_Os01g07200
Os.32568.1.S1_at--903--4951Chr01:3397177..3397201 (25 bp)
GCATATCGTGATTTGTGTGTTGTAT
LOC_Os01g07200
Target Sequence 
GAGCCTGAAGGTCTATGTGTATGATGAGGACCGGTATGGTAGATGCGTCGGAGATATCTACTGCGATGGGGTGTTTGTGC
AGGAGCAAATGTTGAAGAAAGGATGTGCATGGCACTATACTGCCTATGACCAACGACCAGAGCTGGCCAAGTGGGAGAAA
CAGGCGCAATCTGGCAGGAAGGGCTTGTGGGCGGCGTCAAGGCCACAGAAGCCATGGGAATGGAGGAGGGACAAGCGCAA
TGGTACAGCATGAACATGAACCATGAACAACAGATGATTGATTTATAATATTAGCTCTTTCAGACTTGTAGCCCGGAGCA
ATATATGCTTTACACCACAGTAGAAGTGTAGATCGTGTAGTGTGTACACTAGTACATCGGCAGAGGGGTTGTCAAGGAAG
AAGAGGGCGTTGATTGGTGTGTGTACTATAATTGATTAAGTGCATATCGTGATTTGTGTGTTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32568.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis