Browse Element(s) Details


Os.18398.1.S1_at

Description gb:NM_184518.1
DB_XREF= gi:34896125
GEN=P0701D05.17
TID=Os.18398.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.18398 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative nuclease (P0701D05.17), mRNA.
PROD=putative nuclease
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0721211/11Staphylococcal nuclease homologue family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07150Os.8693.1.S1_x_at11/111+3373395..3374007expressed protein
LOC_Os01g07150Os.55406.1.S1_x_at1/111+3373395..3374007expressed protein
LOC_Os01g07160OsAffx.22760.2.S1_at11/111+3377529..3378860F-box domain containing protein
LOC_Os01g07160OsAffx.22760.2.S1_s_at11/111+3377529..3378860F-box domain containing protein
LOC_Os01g07170Os.14483.1.S1_x_at9/111+3383709..3387558HORMA domain containing protein, expressed
LOC_Os01g07170Os.46162.1.S1_at2/111+3383709..3387558HORMA domain containing protein, expressed
LOC_Os01g07180OsAffx.28142.2.S1_s_at11/111+3388559..3389813hypothetical protein
LOC_Os01g07190OsAffx.29435.1.S1_at9/111+3392564..3393112hypothetical protein
LOC_Os01g07200Os.32568.1.S1_at11/111+3394159..3397306nuclease, putative, expressed
LOC_Os01g07212OsAffx.23145.1.S1_s_at11/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07212Os.18398.1.S1_at11/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07212OsAffx.23145.1.S1_at10/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07212Os.20407.1.S1_at1/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07224NANA1+3409051..3410420NA
LOC_Os01g07240Os.54072.1.S1_x_at11/111+3411667..3412767expressed protein
LOC_Os01g07250Os.37707.2.S1_x_at11/111+3419175..3422288Saposin-like type B, region 1 family protein, expressed
LOC_Os01g07250Os.37707.1.S1_at11/111+3419175..3422288Saposin-like type B, region 1 family protein, expressed
LOC_Os01g07260Os.18583.2.S1_x_at11/111+3422543..3426375expressed protein
LOC_Os01g07260Os.18583.2.S1_at11/111+3422543..3426375expressed protein
LOC_Os01g07260Os.18583.1.S1_at11/111+3422543..3426375expressed protein
LOC_Os01g07270OsAffx.22756.2.S1_x_at2/111+3427351..3427725transposon protein, putative, unclassified
LOC_Os01g07270OsAffx.25729.2.S1_x_at1/111+3427351..3427725transposon protein, putative, unclassified
LOC_Os01g07280OsAffx.22756.3.S1_at10/111+3428408..3432420Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004518molecular_functionnuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18398.1.S1_at--693--7691Chr01:3399098..3399122 (25 bp)
GGGTCTTTGAATGTGCCCCAGGAAG
LOC_Os01g07212
Os.18398.1.S1_at--329--7291Chr01:3399144..3399168 (25 bp)
GTGCCGAAGCACTGATGACCAAGAA
LOC_Os01g07212
Os.18398.1.S1_at--328--1211Chr01:3399251..3399275 (25 bp)
AGTTTTCTTCACATGGTTTCTGCCT
LOC_Os01g07212
Os.18398.1.S1_at--1155--6831Chr01:3399266..3399290 (25 bp)
GTTTCTGCCTGTGACACTTCTGAAA
LOC_Os01g07212
Os.18398.1.S1_at--146--5551Chr01:3399287..3399463 (25 bp)
GAAACTTTTCAAGGCATCGATGCAC
LOC_Os01g07212
Os.18398.1.S1_at--1108--1711Chr01:3399462..3399486 (25 bp)
ACCAGAGACCTCAATGCCTTATGGC
LOC_Os01g07212
Os.18398.1.S1_at--929--191Chr01:3399538..3399562 (25 bp)
ATTTCTGTGTATGGCAATGACCGGT
LOC_Os01g07212
Os.18398.1.S1_at--185--4931Chr01:3399977..3400001 (25 bp)
GCTTGCATGGCACTACATTGCCTAT
LOC_Os01g07212
Os.18398.1.S1_at--196--10111Chr01:3399999..3400023 (25 bp)
TATGATCAACGACCGGAGCTTGCCA
LOC_Os01g07212
Os.18398.1.S1_at--57--6831Chr01:3400184..3400208 (25 bp)
GTTTATGGTCTTTGCCGAACCCTGA
LOC_Os01g07212
Os.18398.1.S1_at--693--9711Chr01:3400249..3400523 (25 bp)
TCAAGAGCCCTTACTCTGCAATCTT
LOC_Os01g07212
Target Sequence 
GGGTCTTTGAATGTGCCCCAGGAAGTTCAGAGAACAGCGGCTGACCGTGCCGAAGCACTGATGACCAAGAATTATCAGAG
GGCTGATGAATTGCAGAAGATCATACTTGATGCAGGGTTTAGGTTGTTTTGCTTAGAATTCAGCACAATATTCAGTTTTC
TTCACATGGTTTCTGCCTGTGACACTTCTGAAACTTTTCAAGGCATCGATGCACCAGAGACCTCAATGCCTTATGGCAGA
GAAGCAAAGGAGGAGCTAACAATGCTGGTGCAGGGAAAGAGACTGAAGATTTCTGTGTATGGCAATGACCGGTACAGTCG
ATTAGTTGGAGATGTCGATTGCAATGGGGTATTCGTGCAGGAACACATGCTGAAGAAAGGGCTTGCATGGCACTACATTG
CCTATGATCAACGACCGGAGCTTGCCAGGTGGGAGAATCAGGCAAAAGCGAGTCAAATTGGTTTATGGTCTTTGCCGAAC
CCTGACAAACCATGGGAATGGAGGAAGGAGAAGCGCATCAGGAATTCAAGAGCCCTTACTCTGCAATCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18398.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis