Browse Element(s) Details


OsAffx.29435.1.S1_at

Description gb:NM_184516.1
DB_XREF= gi:34896121
GEN=P0701D05.15
TID=OsAffx.29435.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0701D05.15 (P0701D05.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g071909/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07150Os.8693.1.S1_x_at11/111+3373395..3374007expressed protein
LOC_Os01g07150Os.55406.1.S1_x_at1/111+3373395..3374007expressed protein
LOC_Os01g07160OsAffx.22760.2.S1_at11/111+3377529..3378860F-box domain containing protein
LOC_Os01g07160OsAffx.22760.2.S1_s_at11/111+3377529..3378860F-box domain containing protein
LOC_Os01g07170Os.14483.1.S1_x_at9/111+3383709..3387558HORMA domain containing protein, expressed
LOC_Os01g07170Os.46162.1.S1_at2/111+3383709..3387558HORMA domain containing protein, expressed
LOC_Os01g07180OsAffx.28142.2.S1_s_at11/111+3388559..3389813hypothetical protein
LOC_Os01g07190OsAffx.29435.1.S1_at9/111+3392564..3393112hypothetical protein
LOC_Os01g07200Os.32568.1.S1_at11/111+3394159..3397306nuclease, putative, expressed
LOC_Os01g07212OsAffx.23145.1.S1_s_at11/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07212Os.18398.1.S1_at11/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07212OsAffx.23145.1.S1_at10/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07212Os.20407.1.S1_at1/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07224NANA1+3409051..3410420NA
LOC_Os01g07240Os.54072.1.S1_x_at11/111+3411667..3412767expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29435.1.S1_at--916--8891Chr01:3392515..3392539 (25 bp)
TGAGATTCTGCATCTGGCGCGGTCG
NONE
OsAffx.29435.1.S1_at--848--791Chr01:3392564..3392588 (25 bp)
ATGGGCTTCCACGTGACGGCCAAAG
NONE
OsAffx.29435.1.S1_at--226--9451Chr01:3392691..3392715 (25 bp)
TCGGCAACCATGATGACGCGTTCCT
LOC_Os01g07190
OsAffx.29435.1.S1_at--278--531Chr01:3392741..3392765 (25 bp)
ATCGACAGCGATGTGCATGCACCCG
LOC_Os01g07190
OsAffx.29435.1.S1_at--316--4571Chr01:3392891..3392915 (25 bp)
GCGCTCAGGTACCTTGACGACGACG
LOC_Os01g07190
OsAffx.29435.1.S1_at--216--1951Chr01:3392913..3392937 (25 bp)
ACGGCGATCTCTCCATGGCAGAGAA
LOC_Os01g07190
OsAffx.29435.1.S1_at--507--991Chr01:3392951..3392975 (25 bp)
AGGAGGAAGCTCCTTCTCGCGACCA
LOC_Os01g07190
OsAffx.29435.1.S1_at--148--8131Chr01:3393004..3393028 (25 bp)
GGACTCCGACAGTCTCCGGAAGATG
LOC_Os01g07190
OsAffx.29435.1.S1_at--957--2791Chr01:3393023..3393047 (25 bp)
AAGATGGCCTCCATTGCTGGCCGGG
LOC_Os01g07190
OsAffx.29435.1.S1_at--4--8451Chr01:3393040..3393064 (25 bp)
TGGCCGGGCGACGACGATTCAATGC
LOC_Os01g07190
OsAffx.29435.1.S1_at--787--131Chr01:3393056..3393080 (25 bp)
ATTCAATGCGACTCGTGCTGTACCA
LOC_Os01g07190
Target Sequence 
TGAGATTCTGCATCTGGCGCGGTCGCACCGACCTCACTGTGCCGCCGCCATGGGCTTCCACGTGACGGCCAAAGAGTTCA
AGGTGGTGCGGTTAGGCGTAGAGGTGGGCAAACTGCACCTGCACGCCATTGTGCTCACCGTTGGCGATGCCCGAGGCTGG
AGGGCCCCGGCCGCCATCGGCAACCATGATGACGCGTTCCTCGGTTTCACCGACGACGACGCCAGCATCGACAGCGATGT
GCATGCACCCGGTGTTGGCGGACGGGACGGGTGCCTCCACTGGAGTTTCAGGACAGACTACCTCGACAAGCCCCCACGGC
GTCCTCTCCTTCTCGGCTCTCGCCGCCGACGATTCCTTCCGCCGTGGCTCGTCGCCGCGCTCAGGTACCTTGACGACGAC
GGCGATCTCTCCATGGCAGAGAAGAAGAAGAGGAGGAGGAGGAAGCTCCTTCTCGCGACCACTGCGCAGGAGGCCCACAT
CTACGACCCGGACTCCGACAGTCTCCGGAAGATGGCCTCCATTGCTGGCCGGGCGACGACGATTCAATGCGACTCGTGCT
GTACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29435.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis