Browse Element(s) Details


Os.54072.1.S1_x_at

Description gb:AK101697.1
DB_XREF= gi:32986906
TID=Os.54072.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54072 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033060C18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033060C18, full insert sequence.
FL= gb:AK101697.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0724011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07170Os.14483.1.S1_x_at9/111+3383709..3387558HORMA domain containing protein, expressed
LOC_Os01g07170Os.46162.1.S1_at2/111+3383709..3387558HORMA domain containing protein, expressed
LOC_Os01g07180OsAffx.28142.2.S1_s_at11/111+3388559..3389813hypothetical protein
LOC_Os01g07190OsAffx.29435.1.S1_at9/111+3392564..3393112hypothetical protein
LOC_Os01g07200Os.32568.1.S1_at11/111+3394159..3397306nuclease, putative, expressed
LOC_Os01g07212OsAffx.23145.1.S1_s_at11/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07212Os.18398.1.S1_at11/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07212OsAffx.23145.1.S1_at10/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07212Os.20407.1.S1_at1/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07224NANA1+3409051..3410420NA
LOC_Os01g07240Os.54072.1.S1_x_at11/111+3411667..3412767expressed protein
LOC_Os01g07250Os.37707.2.S1_x_at11/111+3419175..3422288Saposin-like type B, region 1 family protein, expressed
LOC_Os01g07250Os.37707.1.S1_at11/111+3419175..3422288Saposin-like type B, region 1 family protein, expressed
LOC_Os01g07260Os.18583.2.S1_x_at11/111+3422543..3426375expressed protein
LOC_Os01g07260Os.18583.2.S1_at11/111+3422543..3426375expressed protein
LOC_Os01g07260Os.18583.1.S1_at11/111+3422543..3426375expressed protein
LOC_Os01g07270OsAffx.22756.2.S1_x_at2/111+3427351..3427725transposon protein, putative, unclassified
LOC_Os01g07270OsAffx.25729.2.S1_x_at1/111+3427351..3427725transposon protein, putative, unclassified
LOC_Os01g07280OsAffx.22756.3.S1_at10/111+3428408..3432420Leucine Rich Repeat family protein, expressed
LOC_Os01g07289NANA1+3433444..3434022NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54072.1.S1_x_at--69--8191Chr01:3412338..3412362 (25 bp)
GGAAGCACGGCATCCTCAGGTTGTT
LOC_Os01g07240
Os.54072.1.S1_x_at--1120--9631Chr01:3412323..3412347 (25 bp)
TCAGGTTGTTCGTGCTGCCCAAGAT
LOC_Os01g07240
Os.54072.1.S1_x_at--465--9111Chr01:3412311..3412335 (25 bp)
TGCTGCCCAAGATCAGGCTGCGGAG
LOC_Os01g07240
Os.54072.1.S1_x_at--312--7011Chr01:3412199..3412223 (25 bp)
GTACTCGCTGTCGTTCAGGAGCACG
LOC_Os01g07240
Os.54072.1.S1_x_at--194--1911Chr01:3412165..3412189 (25 bp)
ACGTGCTCGTCGATGAGGAGCCTGC
LOC_Os01g07240
Os.54072.1.S1_x_at--792--5091Chr01:3412037..3412061 (25 bp)
GCACGAGAGCTTCAGGGCCATCAAG
LOC_Os01g07240
Os.54072.1.S1_x_at--105--1091Chr01:3412024..3412048 (25 bp)
AGGGCCATCAAGAACTGCCGCGTCG
LOC_Os01g07240
Os.54072.1.S1_x_at--384--4431Chr01:3412000..3412024 (25 bp)
GCCATGACGGTGAGGAGCGCCATCT
LOC_Os01g07240
Os.54072.1.S1_x_at--686--10051Chr01:3411884..3411908 (25 bp)
TAGTTCACGCTGTCTGTCACTGTTA
LOC_Os01g07240
Os.54072.1.S1_x_at--481--10451Chr01:3411862..3411886 (25 bp)
TTACTCGGCTGCTGTTTCAACTTGG
LOC_Os01g07240
Os.54072.1.S1_x_at--734--2491Chr01:3411818..3411842 (25 bp)
AACAGTGTTCTATTTACCATATGCA
LOC_Os01g07240
Target Sequence 
GGAAGCACGGCATCCTCAGGTTGTTCGTGCTGCCCAAGATCAGGCTGCGGAGAGGCGGCCGGCCGGTGTCGGGCTCGCCG
ACGTCGTCCTGCGCCTCCTCCACCTCGTCGTCGTCGTCGTCGGCCTCGTTCTACTCGTCGTACTCGCTGTCGTTCAGGAG
CACGCAGTCGCCGACGTGCTCGTCGATGAGGAGCCTGCAGGGGCACGGCGGCGGCGGCCGCGCGTTCGGGGACGACGACG
ACGATGACGACGACGGCGGCGACGACGACATGGCGGCGTCGACGGCGTGCTTCAGGGTGCGGCACGAGAGCTTCAGGGCC
ATCAAGAACTGCCGCGTCGCCATGACGGTGAGGAGCGCCATCTCGTCGGTGGCCGCCGGCGCCGGCGCCGGCGGCCACGG
CTCTAGCGCCGCCGTGGCGCAGAAGGCGGCGTAGCCTCTCCTCTTCTTGCCTCGTAGTTCACGCTGTCTGTCACTGTTAC
TCGGCTGCTGTTTCAACTTGGGGTGTAATTTGCAGGTTTTAACAGTGTTCTATTTACCATATGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54072.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis