Browse Element(s) Details


OsAffx.22756.3.S1_at

Description tigr:9629.m00660
TID=OsAffx.22756.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0728010/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07212OsAffx.23145.1.S1_s_at11/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07212Os.18398.1.S1_at11/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07212OsAffx.23145.1.S1_at10/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07212Os.20407.1.S1_at1/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07224NANA1+3409051..3410420NA
LOC_Os01g07240Os.54072.1.S1_x_at11/111+3411667..3412767expressed protein
LOC_Os01g07250Os.37707.2.S1_x_at11/111+3419175..3422288Saposin-like type B, region 1 family protein, expressed
LOC_Os01g07250Os.37707.1.S1_at11/111+3419175..3422288Saposin-like type B, region 1 family protein, expressed
LOC_Os01g07260Os.18583.2.S1_x_at11/111+3422543..3426375expressed protein
LOC_Os01g07260Os.18583.2.S1_at11/111+3422543..3426375expressed protein
LOC_Os01g07260Os.18583.1.S1_at11/111+3422543..3426375expressed protein
LOC_Os01g07270OsAffx.22756.2.S1_x_at2/111+3427351..3427725transposon protein, putative, unclassified
LOC_Os01g07270OsAffx.25729.2.S1_x_at1/111+3427351..3427725transposon protein, putative, unclassified
LOC_Os01g07280OsAffx.22756.3.S1_at10/111+3428408..3432420Leucine Rich Repeat family protein, expressed
LOC_Os01g07289NANA1+3433444..3434022NA
LOC_Os01g07300Os.1665.1.S1_a_at11/111+3441961..3443395expressed protein
LOC_Os01g07300Os.1665.2.S1_x_at11/111+3441961..3443395expressed protein
LOC_Os01g07310Os.9898.1.S1_at11/111+3443739..3446984integral membrane protein, putative, expressed
LOC_Os01g07320OsAffx.10952.2.S1_s_at11/111+3452056..3452861hypothetical protein
LOC_Os01g07320OsAffx.10952.2.S1_at11/111+3452056..3452861hypothetical protein
LOC_Os01g07320OsAffx.10952.1.S1_at1/111+3452056..3452861hypothetical protein
LOC_Os01g07330Os.34951.1.S1_at11/111+3453671..3461754expressed protein
LOC_Os01g07330Os.34951.2.S1_x_at4/111+3453671..3461754expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22756.3.S1_at--403--10751Chr01:3429579..3429603 (25 bp)
TTGACATTCACCAACAGCTCATTTC
LOC_Os01g07280
OsAffx.22756.3.S1_at--1127--351Chr01:3429548..3429572 (25 bp)
ATAATGATTTGTGTGGTCCTCCGCT
LOC_Os01g07280
OsAffx.22756.3.S1_at--768--7791Chr01:3429534..3429558 (25 bp)
GGTCCTCCGCTATCTAAAGGTTGCA
LOC_Os01g07280
OsAffx.22756.3.S1_at--815--551Chr01:3429469..3429493 (25 bp)
ATCCGTAGATATTGTGTTGTTCCTC
LOC_Os01g07280
OsAffx.22756.3.S1_at--98--7931Chr01:3429419..3429443 (25 bp)
GGTTGGCCATTGCTGTTGTAGTATC
LOC_Os01g07280
OsAffx.22756.3.S1_at--145--2131NONE
ACAGGCTACAAGACACGCAACGGAG
NONE
OsAffx.22756.3.S1_at--353--10511Chr01:3428705..3428729 (25 bp)
TTCAGACTCTGGAGGGCGTAGATCC
LOC_Os01g07280
OsAffx.22756.3.S1_at--1112--6931Chr01:3428688..3428712 (25 bp)
GTAGATCCGGCAACGCTGCGTTATG
LOC_Os01g07280
OsAffx.22756.3.S1_at--65--1871Chr01:3428577..3428601 (25 bp)
ACGACCTTGCCGTTGACAGGTCAGA
LOC_Os01g07280
OsAffx.22756.3.S1_at--141--1291Chr01:3428553..3428577 (25 bp)
AGATCTCACCTGCTCCTGTTGAGAA
LOC_Os01g07280
OsAffx.22756.3.S1_at--1113--8451Chr01:3428509..3428533 (25 bp)
TGGCCTTCTATCACATACACAACGC
LOC_Os01g07280
Target Sequence 
TTGACATTCACCAACAGCTCATTTCTGGGGAATAATGATTTGTGTGGTCCTCCGCTATCTAAAGGTTGCATCAACATGAC
AATTCTGAATGTGATCCCTTCCAAGAAGAAATCCGTAGATATTGTGTTGTTCCTCTTTTCTGGATTGGGATTCGGCCTTG
GGTTGGCCATTGCTGTTGTAGTATCATGGGGAATACCCATTAGAAAACAGGCTACAAGACACGCAACGGAGAGGATTCGG
AGGGGTTCAGACTCTGGAGGGCGTAGATCCGGCAACGCTGCGTTATGGGAGGAGGAGAGGTTGGTTTATGGAGTGTACAG
ACCTCGGAGGTGGGCGACGCCATGGGAGGGAGAGAAGGTCCATGACGAGGAAGACGACCTTGCCGTTGACAGGTCAGAGA
TCTCACCTGCTCCTGTTGAGAAGAGCAATGGCGCGGGTTCCTGGCCTTCTATCACATACACAACGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22756.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis