Browse Element(s) Details


Os.9898.1.S1_at

Description gb:AK119227.1
DB_XREF= gi:37988850
TID=Os.9898.1
CNT=50
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.9898 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0701D05.25 (P0701D05.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-A03, full insert sequence.
FL= gb:AK119227.1 gb:AK062253.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0731011/11integral membrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07250Os.37707.2.S1_x_at11/111+3419175..3422288Saposin-like type B, region 1 family protein, expressed
LOC_Os01g07250Os.37707.1.S1_at11/111+3419175..3422288Saposin-like type B, region 1 family protein, expressed
LOC_Os01g07260Os.18583.2.S1_x_at11/111+3422543..3426375expressed protein
LOC_Os01g07260Os.18583.2.S1_at11/111+3422543..3426375expressed protein
LOC_Os01g07260Os.18583.1.S1_at11/111+3422543..3426375expressed protein
LOC_Os01g07270OsAffx.22756.2.S1_x_at2/111+3427351..3427725transposon protein, putative, unclassified
LOC_Os01g07270OsAffx.25729.2.S1_x_at1/111+3427351..3427725transposon protein, putative, unclassified
LOC_Os01g07280OsAffx.22756.3.S1_at10/111+3428408..3432420Leucine Rich Repeat family protein, expressed
LOC_Os01g07289NANA1+3433444..3434022NA
LOC_Os01g07300Os.1665.1.S1_a_at11/111+3441961..3443395expressed protein
LOC_Os01g07300Os.1665.2.S1_x_at11/111+3441961..3443395expressed protein
LOC_Os01g07310Os.9898.1.S1_at11/111+3443739..3446984integral membrane protein, putative, expressed
LOC_Os01g07320OsAffx.10952.2.S1_s_at11/111+3452056..3452861hypothetical protein
LOC_Os01g07320OsAffx.10952.2.S1_at11/111+3452056..3452861hypothetical protein
LOC_Os01g07320OsAffx.10952.1.S1_at1/111+3452056..3452861hypothetical protein
LOC_Os01g07330Os.34951.1.S1_at11/111+3453671..3461754expressed protein
LOC_Os01g07330Os.34951.2.S1_x_at4/111+3453671..3461754expressed protein
LOC_Os01g07340Os.34951.2.S1_at9/111+3462436..3464322expressed protein
LOC_Os01g07340Os.34951.2.S1_x_at6/111+3462436..3464322expressed protein
LOC_Os01g07350Os.23703.2.S1_x_at11/111+3464660..3468907calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g07350Os.23703.2.S1_at11/111+3464660..3468907calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g07350Os.23703.1.A1_at10/111+3464660..3468907calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g07360Os.34142.1.S1_at11/111+3470648..3474136CENP-E like kinetochore protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9898.1.S1_at--600--8211Chr01:3444420..3444444 (25 bp)
GGAATCCTCATTGCTGTGATTGGGA
LOC_Os01g07310
Os.9898.1.S1_at--257--6251Chr01:3444397..3444421 (25 bp)
GATGGTATCGTACTCATACTTCTGC
LOC_Os01g07310
Os.9898.1.S1_at--713--5551Chr01:3444192..3444216 (25 bp)
GAAAGCGAATCGGACCCCTTGATCT
LOC_Os01g07310
Os.9898.1.S1_at--119--10771Chr01:3444174..3444198 (25 bp)
TTGATCTCGGACTCTTTGAGCACTG
LOC_Os01g07310
Os.9898.1.S1_at--9--5791Chr01:3444126..3444150 (25 bp)
GACGACGAGGCTCTGAAGGTACCTA
LOC_Os01g07310
Os.9898.1.S1_at--727--5311Chr01:3444112..3444136 (25 bp)
GAAGGTACCTATGTGGAGCTCCAAG
LOC_Os01g07310
Os.9898.1.S1_at--228--5311Chr01:3443998..3444022 (25 bp)
GAAGGAAGCCAACCCTGAGTGTAAT
LOC_Os01g07310
Os.9898.1.S1_at--717--4891Chr01:3443931..3443955 (25 bp)
GCTTACCATGTGGTGCTGTCAGTAA
LOC_Os01g07310
Os.9898.1.S1_at--772--3131Chr01:3443883..3443907 (25 bp)
AATTATTTACCTCTACACTCCAGAT
LOC_Os01g07310
Os.9898.1.S1_at--877--2511Chr01:3443793..3443817 (25 bp)
AACTTCAGCATCTGCTTCAGCATTG
LOC_Os01g07310
Os.9898.1.S1_at--329--3611Chr01:3443773..3443797 (25 bp)
CATTGTAACAACTTGCCAGCAGGAC
LOC_Os01g07310
Target Sequence 
GGAATCCTCATTGCTGTGATTGGGATGGTATCGTACTCATACTTCTGCACAAAAGAGGCTCCACCAAAACCCACTGAAGC
CTCCCCACAACTCAACCAGGTAAAAGAAAGCGAATCGGACCCCTTGATCTCGGACTCTTTGAGCACTGCTGAAAATGGGG
GCAACGCAGGCGACGACGAGGCTCTGAAGGTACCTATGTGGAGCTCCAAGTACTCAAAGGCATGAAGAAACTGCTCTGAT
GATACTAGTGTATGGTTCTATACAGAGTTCAGCTTAGTAGGCAGATAGTACTAGGGTTGGAAGGAAGCCAACCCTGAGTG
TAATGAACGATGTCTGTTCCATTTTTGGTCTTTTTTTTTTNCTTTTTGCTTACCATGTGGTGCTGTCAGTAAATGAAATC
TCACTTTGAAGAGGAAATTATTTACCTCTACACTCCAGATGGCAGATTGGCCTTAAAGCTAGACACAAAAGGGCTAGATC
TCTTTGTAATATTTTTCATGTGTTCAACTTCAGCATCTGCTTCAGCATTGTAACAACTTGCCAGCAGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9898.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis