Browse Element(s) Details


Os.18583.2.S1_x_at

Description gb:NM_184521.1
DB_XREF= gi:34896131
GEN=P0701D05.20
TID=Os.18583.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.18583 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0701D05.20 (P0701D05.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0701D05.20 (P0701D05.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0726011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07212OsAffx.23145.1.S1_s_at11/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07212Os.18398.1.S1_at11/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07212OsAffx.23145.1.S1_at10/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07212Os.20407.1.S1_at1/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07224NANA1+3409051..3410420NA
LOC_Os01g07240Os.54072.1.S1_x_at11/111+3411667..3412767expressed protein
LOC_Os01g07250Os.37707.2.S1_x_at11/111+3419175..3422288Saposin-like type B, region 1 family protein, expressed
LOC_Os01g07250Os.37707.1.S1_at11/111+3419175..3422288Saposin-like type B, region 1 family protein, expressed
LOC_Os01g07260Os.18583.2.S1_x_at11/111+3422543..3426375expressed protein
LOC_Os01g07260Os.18583.2.S1_at11/111+3422543..3426375expressed protein
LOC_Os01g07260Os.18583.1.S1_at11/111+3422543..3426375expressed protein
LOC_Os01g07270OsAffx.22756.2.S1_x_at2/111+3427351..3427725transposon protein, putative, unclassified
LOC_Os01g07270OsAffx.25729.2.S1_x_at1/111+3427351..3427725transposon protein, putative, unclassified
LOC_Os01g07280OsAffx.22756.3.S1_at10/111+3428408..3432420Leucine Rich Repeat family protein, expressed
LOC_Os01g07289NANA1+3433444..3434022NA
LOC_Os01g07300Os.1665.1.S1_a_at11/111+3441961..3443395expressed protein
LOC_Os01g07300Os.1665.2.S1_x_at11/111+3441961..3443395expressed protein
LOC_Os01g07310Os.9898.1.S1_at11/111+3443739..3446984integral membrane protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18583.2.S1_x_at--1088--2151Chr01:3423723..3423747 (25 bp)
ACAGCCACACTTCAGCCTAGAAAGG
LOC_Os01g07260
Os.18583.2.S1_x_at--203--1031Chr01:3423553..3423577 (25 bp)
AGGGTACTCACCTGACCTTTGATGA
LOC_Os01g07260
Os.18583.2.S1_x_at--805--3351Chr01:3423545..3423569 (25 bp)
CACCTGACCTTTGATGAGACTCTCT
LOC_Os01g07260
Os.18583.2.S1_x_at--460--5991Chr01:3423530..3423554 (25 bp)
GAGACTCTCTTGCAGTCTGGATCAT
LOC_Os01g07260
Os.18583.2.S1_x_at--282--7751Chr01:3423494..3423518 (25 bp)
GGTGTCGAGAATACTATGCTGCTTA
LOC_Os01g07260
Os.18583.2.S1_x_at--1079--771Chr01:3423321..3423345 (25 bp)
ATGTGCAGCTACTAATTCTCTCCGA
LOC_Os01g07260
Os.18583.2.S1_x_at--959--3291Chr01:3423288..3423312 (25 bp)
CAAATATCCTACCTTCTGACTTGAT
LOC_Os01g07260
Os.18583.2.S1_x_at--1133--3551Chr01:3423249..3423273 (25 bp)
CATCATCTGTTCCTGCGGTAAATGC
LOC_Os01g07260
Os.18583.2.S1_x_at--535--7851Chr01:3423195..3423219 (25 bp)
GGTATTTGGCCACAGTTAGGTCTCT
LOC_Os01g07260
Os.18583.2.S1_x_at--305--10451Chr01:3423180..3423204 (25 bp)
TTAGGTCTCTTCCTCAGTCAACTGA
LOC_Os01g07260
Os.18583.2.S1_x_at--379--2791Chr01:3422800..3422824 (25 bp)
AAGAGTCTCTCCATGGAGCACTGGC
LOC_Os01g07260
Target Sequence 
ACAGCCACACTTCAGCCTAGAAAGGACAACCAATCAGGAAGATTGGTTACAGGAGTTTTACAGTTACCTCAGGGTACTCA
CCTGACCTTTGATGAGACTCTCTTGCAGTCTGGATCATTGACATCCAAAGGTGTCGAGAATACTATGCTGCTTAAGAACT
TGATGGAGTCACAGAAGGTTGAGTATGATTTTGAGTTCTACAAGTTGGAAATGGCAACTGATGTGCAGCTACTAATTCTC
TCCGAGGGAAAATCAAATATCCTACCTTCTGACTTGATAGTACCTTTCCGCCCATCATCTGTTCCTGCGGTAAATGCAAG
CTCCGAGGAACTTGAAAGTTGGAGATGGTATTTGGCCACAGTTAGGTCTCTTCCTCAGTCAACTGAAACTGATACATACC
AGATGATTCAAGATGAAATGGTCAATGCCATGCGTGATGATAGGAGCTTGGGTTGTTCTGAACTTAGCAGATGGCTAACG
ATGGCACAGATAATGGCTGCAAGCTTTGGTGAGAAGAGTCTCTCCATGGAGCACTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18583.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis